minfi
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see minfi.
Analyze Illumina Infinium DNA methylation arrays
Bioconductor version: 3.8
Tools to analyze & visualize Illumina Infinium methylation arrays.
Author: Kasper Daniel Hansen [cre, aut], Martin Aryee [aut], Rafael A. Irizarry [aut], Andrew E. Jaffe [ctb], Jovana Maksimovic [ctb], E. Andres Houseman [ctb], Jean-Philippe Fortin [ctb], Tim Triche [ctb], Shan V. Andrews [ctb], Peter F. Hickey [ctb]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
citation("minfi")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("minfi")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("minfi")
minfi User's Guide | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DNAMethylation, DataImport, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylationArray, Microarray, MultiChannel, Normalization, Preprocessing, QualityControl, Software, TwoChannel |
Version | 1.28.4 |
In Bioconductor since | BioC 2.9 (R-2.14) (12.5 years) |
License | Artistic-2.0 |
Depends | methods, BiocGenerics(>= 0.15.3), GenomicRanges, SummarizedExperiment(>= 1.1.6), Biostrings, bumphunter(>= 1.1.9) |
Imports | S4Vectors, GenomeInfoDb, Biobase(>= 2.33.2), IRanges, beanplot, RColorBrewer, lattice, nor1mix, siggenes, limma, preprocessCore, illuminaio(>= 0.23.2), DelayedMatrixStats(>= 1.3.4), mclust, genefilter, nlme, reshape, MASS, quadprog, data.table, GEOquery, stats, grDevices, graphics, utils, DelayedArray(>= 0.7.38), HDF5Array, BiocParallel |
System Requirements | |
URL | https://github.com/hansenlab/minfi |
Bug Reports | https://github.com/hansenlab/minfi/issues |
See More
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | minfi_1.28.4.tar.gz |
Windows Binary | minfi_1.28.4.zip |
Mac OS X 10.11 (El Capitan) | minfi_1.28.4.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/minfi |
Source Repository (Developer Access) | git clone [email protected]:packages/minfi |
Bioc Package Browser | https://code.bioconductor.org/browse/minfi/ |
Package Short Url | https://bioconductor.org/packages/minfi/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.8 | Source Archive |