DelayedMatrixStats
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see DelayedMatrixStats.
Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects
Bioconductor version: 3.8
A port of the 'matrixStats' API for use with DelayedMatrix objects from the 'DelayedArray' package. High-performing functions operating on rows and columns of DelayedMatrix objects, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.
Author: Peter Hickey <peter.hickey at gmail.com>
Maintainer: Peter Hickey <peter.hickey at gmail.com>
citation("DelayedMatrixStats")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DelayedMatrixStats")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DelayedMatrixStats")
Overview of DelayedMatrixStats | HTML | R Script |
Reference Manual | ||
LICENSE | Text |
Details
biocViews | DataRepresentation, Infrastructure, Software |
Version | 1.4.0 |
In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
License | MIT + file LICENSE |
Depends | DelayedArray(>= 0.7.37) |
Imports | methods, matrixStats (>= 0.53.1), Matrix, S4Vectors(>= 0.17.5), IRanges, HDF5Array(>= 1.7.10), BiocParallel |
System Requirements | |
URL | https://github.com/PeteHaitch/DelayedMatrixStats |
Bug Reports | https://github.com/PeteHaitch/DelayedMatrixStats/issues |
See More
Suggests | testthat, knitr, rmarkdown, covr, BiocStyle, microbenchmark, profmem |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | bsseq, dmrseq, minfi, scater, scran |
Suggests Me | DelayedArray |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | DelayedMatrixStats_1.4.0.tar.gz |
Windows Binary | DelayedMatrixStats_1.4.0.zip |
Mac OS X 10.11 (El Capitan) | DelayedMatrixStats_1.4.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/DelayedMatrixStats |
Source Repository (Developer Access) | git clone [email protected]:packages/DelayedMatrixStats |
Bioc Package Browser | https://code.bioconductor.org/browse/DelayedMatrixStats/ |
Package Short Url | https://bioconductor.org/packages/DelayedMatrixStats/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.8 | Source Archive |