sesame

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see sesame.

Tools For Analyzing Illumina Infinium DNA Methylation Arrays

Installation

To install this package, start R (version "3.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sesame")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sesame")

SeSAMe User Guide	HTML	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	DNAMethylation, MethylationArray, Preprocessing, QualityControl, Software
Version	1.0.0
In Bioconductor since	BioC 3.8 (R-3.5) (5.5 years)
License	Artistic-2.0
Depends	R (>= 3.5), sesameData, methods
Imports	R6, grDevices, utils, illuminaio, MASS, GenomicRanges, IRanges, grid, preprocessCore, stats, S4Vectors, randomForest, wheatmap, ggplot2, parallel, DNAcopy
System Requirements
URL	https://github.com/zwdzwd/sesame
Bug Reports	https://github.com/zwdzwd/sesame/issues

See More

Suggests	scales, knitr, rmarkdown, testthat, minfi, SummarizedExperiment, FlowSorted.CordBloodNorway.450k
Linking To
Enhances
Depends On Me
Imports Me	TCGAbiolinks, TCGAbiolinksGUI
Suggests Me	sesameData
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	sesame_1.0.0.tar.gz
Windows Binary	sesame_1.0.0.zip
Mac OS X 10.11 (El Capitan)	sesame_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/sesame
Source Repository (Developer Access)	git clone [email protected]:packages/sesame
Bioc Package Browser	https://code.bioconductor.org/browse/sesame/
Package Short Url	https://bioconductor.org/packages/sesame/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.8	Source Archive