Bioconductor version: Release (2.7)
A package that extends and improves the functionality of the base affy package. Routines that make heavy use of compiled code for speed. Central focus is on implementation of methods for fitting probe-level models and tools using these models. PLM based quality assessment tools.
Author: Ben Bolstad
Maintainer: Ben Bolstad
To install this package, start R and enter:
source("http:///biocLite.R") biocLite("affyPLM")
R Script | affyPLM: Advanced use of the MAplot function | |
R Script | affyPLM: Fitting Probe Level Models | |
R Script | affyPLM: Model Based QC Assessment of Affymetrix GeneChips | |
R Script | affyPLM: the threestep function |
biocViews | Microarray, OneChannel, Preprocessing, QualityControl |
Depends | R, affy, Biobase, methods, gcrma, stats, preprocessCore |
Imports | |
Suggests | affydata |
System Requirements | |
License | GPL (>= 2) |
URL | http://bmbolstad.com |
Depends On Me | RefPlus, arrayQualityMetrics, frmaTools, frma |
Imports Me | affyQCReport, frma |
Suggests Me | AffyExpress, ArrayTools, BiocCaseStudies, affylmGUI, arrayMvout, frmaTools, metahdep, oneChannelGUI |
Version | 1.26.1 |
Package Source | affyPLM_1.26.1.tar.gz |
Windows Binary | affyPLM_1.26.1.zip (32-bit only) |
MacOS 10.5 (Leopard) binary | affyPLM_1.26.1.tgz |
Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!