Package	Download_score
Repitools	306
zlibbioc	54434
mzR	3316
Rsamtools	23667
metahdep	110
ShortRead	6256
DESeq	180
annotate	17293
MassArray	96
limma	33884
Category	1686
eisa	50
bioDist	276
Vega	35
puma	150
rama	45
RchyOptimyx	41
pickgene	103
plrs	35
PING	131
plgem	142
prada	56
a4Base	176
flowBeads	115
fdrame	116
gcrma	1192
MassSpecWavelet	1777
mgsa	154
DESeq2	22112
altcdfenvs	153
vbmp	143
HELP	115
snm	165
SeqArray	926
SimBindProfiles	68
iterativeBMA	120
rbsurv	132
beadarray	674
bumphunter	2715
affycoretools	397
biovizBase	5181
ggbio	1956
OCplus	139
OLINgui	118
qcmetrics	130
widgetTools	1355
clst	117
xps	40
SBMLR	122
seqLogo	3838
SplicingGraphs	139
triform	43
minfi	2368
gaia	47
isobar	138
GeneMeta	150
logicFS	138
biocGraph	255
ChIPsim	136
cobindR	43
RWebServices	22
rqubic	135
BayesPeak	44
bgafun	44
cghMCR	137
DynDoc	1349
pcaMethods	5217
globaltest	1880
HTqPCR	123
CNVtools	40
HEM	119
RDRToolbox	170
idiogram	122
qrqc	49
msmsTests	278
REDseq	145
STRINGdb	1297
CorMut	37
birta	41
ExpressionView	47
pathifier	129
ctc	285
ArrayExpress	426
aCGH	238
twilight	142
RTopper	117
genefu	372
geNetClassifier	161
flowViz	1002
ChIPseqR	142
minet	776
sagenhaft	114
SamSPECTRAL	175
segmentSeq	131
SeqGSEA	228
gCMAPWeb	35
crlmm	296
flowFlowJo	20
arrayQuality	208
SIM	121
paircompviz	107
pcaGoPromoter	35
pdInfoBuilder	166
AnnotationFuncs	43
CNTools	162
BiSeq	138
CORREP	58
bioassayR	121
genoset	50
hypergraph	192
ArrayExpressHTS	45
beadarraySNP	69
easyRNASeq	183
GGBase	52
OLIN	136
RbcBook1	184
joda	42
spliceR	34
BitSeq	53
ARRmNormalization	113
TSSi	38
TypeInfo	94
customProDB	138
RDAVIDWebService	60
Rdisop	428
ReadqPCR	219
GEOsubmission	120
spkTools	113
h5vc	137
SeqVarTools	442
webbioc	125
rfPred	109
graphite	3120
SAGx	55
RNASeqPower	203
GWASTools	616
spotSegmentation	40
iPAC	137
LPE	130
a4	147
IdMappingRetrieval	42
PADOG	334
PCpheno	45
maanova	63
flowMap	62
HTSFilter	225
trio	155
r3Cseq	131
NetSAM	139
NTW	105
ACME	151
imageHTS	56
tigre	130
quantsmooth	632
eiR	111
pvac	113
copa	116
CSSP	37
Icens	431
DirichletMultinomial	4807
phyloseq	5448
mzID	3088
GeneRegionScan	128
iBMQ	87
splicegear	44
MiPP	122
dks	96
PLPE	115
pcot2	54
GOSim	106
codelink	140
macat	74
CGHbase	420
HTSanalyzeR	46
domainsignatures	36
multiscan	113
NCIgraph	117
DeconRNASeq	283
DriverNet	99
BioSeqClass	47
PROcess	143
spliceSites	34
miRNApath	109
iChip	116
BaseSpaceR	118
pkgDepTools	62
ChIPXpress	103
flowPhyto	13
IPPD	37
GeneGroupAnalysis	9
CRISPRseek	174
cosmoGUI	11
Ruuid	13
PECA	113
RMAGEML	10
pamr	16
trackViewer	603
fbat	8
BEAT	116
Rdbi	14
simulatorAPMS	9
COMPASS	131
scsR	35
BiocCheck	1731
messina	104
Rcpi	160
viper	738
rpx	319
Rariant	42
rflowcyt	13
CoverageView	112
INPower	111
CAFE	122
VariantFiltering	133
RefNet	33
biocDatasets	9
monocle	3269
HDTD	87
DEGreport	612
Pviz	119
oposSOM	139
riboSeq	0
shinyMethyl	154
missMethyl	1037
FourCSeq	30
ALDEx2	1189
MSGFplus	32
GenomicTuples	102
exonfindR	0
switchBox	140
csaw	566
STATegRa	112
derfinder	559
paxtoolsr	118
PSEA	53
quantro	294
groHMM	108
derfinderHelper	560
facopy	22
flowCHIC	112
COSNet	101
IMPCdata	85
MSnID	311
nethet	115
FlowSOM	1082
pxr	0
PROPER	131
flowCore	2818
Biobase	48908
preprocessCore	14149
genefilter	11952
EBImage	2781
IRanges	54022
AnnotationDbi	35990
GenomicFeatures	19215
BSgenome	16190
MVCClass	135
Mfuzz	1337
AgiMicroRna	184
GenomeGraphs	52
GEOmetadb	254
affy	7949
AnnotationForge	2118
BiocCaseStudies	50
BCRANK	132
ChIPpeakAnno	1079
clstutils	116
sva	7413
wateRmelon	836
SNAGEE	107
procoil	113
PWMEnrich	201
RankProd	288
Rbowtie	493
piano	464
PSICQUIC	49
rBiopaxParser	186
GeneticsPed	139
GeneSelectMMD	130
CSAR	132
mBPCR	116
mdqc	125
MEDME	110
metaSeq	116
MiChip	108
TFBSTools	3511
topGO	2885
UniProt.ws	440
weaver	119
RNAither	52
rsbml	167
BiocParallel	41419
made4	289
illuminaio	2884
IsoGeneGUI	47
KCsmart	123
limmaGUI	134
MLInterfaces	431
sigPathway	60
BeadDataPackR	567
annaffy	292
Rgraphviz	9424
ASSET	141
Ringo	220
ADaCGH2	129
CoCiteStats	118
snpStats	2112
ssize	147
TDARACNE	46
flowType	39
lol	30
GSVA	7087
motifStack	711
ontoCAT	34
chimera	45
clusterProfiler	19936
DEXSeq	1458
girafe	151
GRENITS	102
affyQCReport	55
pgUtils	10
GLAD	225
flowMeans	176
flowTrans	145
MotifDb	602
coRNAi	38
HilbertVisGUI	82
cnvGSA	115
fastseg	770
genomeIntervals	204
GOFunction	43
goseq	1419
hyperdraw	140
MSnbase	3192
BioNet	282
ddgraph	34
keggorthology	235
spade	28
PANR	112
PAPi	38
RIPSeeker	48
ITALICS	115
Roleswitch	39
lpNet	121
LVSmiRNA	41
AffyExpress	51
CNORfuzzy	126
CNORdt	119
ChromHeatMap	130
clonotypeR	42
ChemmineR	820
ReportingTools	598
BrainStars	41
affypdnn	47
ENVISIONQuery	40
triplex	122
ampliQueso	31
biocViews	4357
deltaGseg	104
affycomp	150
cn.mops	262
ecolitk	131
cycle	120
Gviz	3426
ArrayTV	37
ChAMP	699
exomePeak	44
ExiMiR	115
timecourse	136
tilingArray	169
Rolexa	29
BioMVCClass	125
antiProfiles	109
RTCA	116
mitoODE	34
Agi4x44PreProcess	18
TurboNorm	119
ReactomePA	2665
ReQON	63
VariantTools	175
TargetSearch	122
QuasR	366
GlobalAncova	1058
CAGEr	264
iSeq	98
jmosaics	23
MLP	169
DECIPHER	2843
CGEN	113
omicade4	190
OmicCircos	226
AffyCompatible	63
CNAnorm	116
synapter	167
networkBMA	46
SwimR	29
cleanUpdTSeq	124
CMA	176
genomes	126
deepSNV	183
NormqPCR	199
nucleR	142
frmaTools	121
ProCoNA	32
BicARE	150
EDASeq	1744
fabia	198
BHC	90
flowUtils	65
flagme	105
MSstats	534
anota	128
DFP	124
prebs	115
epigenomix	116
MMDiff	29
spikeLI	100
Resourcerer	17
daMA	113
ensemblVEP	144
DOSE	19015
geneRecommender	115
cisPath	97
ChemmineOB	321
seqCNA	55
BufferedMatrixMethods	116
proteinProfiles	93
BiGGR	112
BufferedMatrix	123
snpMatrix	12
tRanslatome	210
CoGAPS	323
ontoTools	16
les	123
xmapcore	8
hexbin	34
SJava	20
cosmo	11
gmapR	171
gene2pathway	13
mmnet	29
ccrepe	161
COHCAP	59
roar	112
GeneOverlap	564
asmn	6
iClusterPlus	414
exonmap	11
pairseqsim	3
GeneRfold	6
Seqnames	0
GeneticsBase	8
edd	16
CNEr	3445
MIMOSA	46
GSCA	106
Clomial	100
MLSeq	172
unifiedWMWqPCR	79
gff3Plotter	3
Sushi	71
metaMS	205
flowCL	41
DMRforPairs	48
TitanCNA	131
hiAnnotator	125
GSAR	142
ssviz	109
arrayQCplot	3
netbiov	57
GSReg	109
OncoSimulR	109
interactiveDisplayBase	5932
MBASED	103
methylPipe	143
Rnits	101
SNPRelate	1700
rRDP	107
proBAMr	98
miRNAtap	182
polyester	133
GOexpress	130
regionReport	172
tracktables	199
CoRegNet	55
kebabs	157
Rqc	299
metabomxtr	101
PAA	116
pepStat	98
GenomicInteractions	422
GenoView	14
ASGSCA	107
EnrichmentBrowser	561
FEM	37
geecc	32
SGSeq	329
compEpiTools	114
RUVnormalize	118
mygene	341
CFAssay	91
genomation	684
mdgsa	30
gQTLstats	33
TRONCO	116
affydata	4
oligo	1642
BiocGenerics	57362
Clonality	47
impute	10603
survcomp	1289
hopach	333
panp	141
tweeDEseq	168
DNAcopy	5076
graph	19108
edgeR	23909
gage	853
pathview	4527
BiocInstaller	254
affylmGUI	156
BiocStyle	5556
biomvRCNS	122
ASEB	108
SpacePAC	122
shinyTANDEM	34
stepwiseCM	34
supraHex	394
randPack	109
PathNet	115
R453Plus1Toolbox	133
Biostrings	48895
XVector	49503
chopsticks	141
clippda	124
EBSeq	390
MBCB	111
mcaGUI	45
MEDIPS	166
methVisual	41
methyAnalysis	48
methylMnM	114
affyPLM	982
AnnotationHub	11448
sSeq	194
TEQC	132
trigger	124
ROntoTools	209
RpsiXML	54
plateCore	42
LPEadj	68
interactiveDisplay	142
maCorrPlot	107
maigesPack	74
MinimumDistance	140
convert	171
genoCN	104
Mulcom	125
bgx	114
DTA	111
vtpnet	123
DrugVsDisease	184
ROC	1104
tkWidgets	1353
iontree	32
lumi	1204
GraphPAC	124
SPEM	133
IdMappingAnalysis	38
fmcsR	255
epivizr	154
GENE.E	29
Cormotif	126
cellGrowth	36
makecdfenv	211
rtracklayer	20622
DEGseq	206
Rsubread	2208
cn.farms	121
simpleaffy	110
BRAIN	163
OrderedList	124
phenoTest	156
DAVIDQuery	28
logitT	57
manta	42
MotIV	57
rGADEM	361
GGtools	57
GSRI	123
cqn	320
AffyTiling	35
gwascat	634
BGmix	36
ffpe	120
parody	127
oligoClasses	1630
ScISI	52
XDE	132
VanillaICE	251
pdmclass	42
flowWorkspace	1174
CNORode	138
SANTA	96
flowStats	482
CALIB	49
adSplit	128
BADER	113
DART	117
KEGGSOAP	18
OSAT	135
EBarrays	226
explorase	40
rnaSeqMap	45
baySeq	478
cancerclass	305
CGHnormaliter	126
rHVDM	43
Rmagpie	126
RGalaxy	43
RLMM	109
RTN	208
rols	448
arrayMvout	117
flowFP	193
GeneSelector	41
ibh	106
iASeq	100
splots	224
SSPA	104
AllelicImbalance	148
reb	45
plier	163
RedeR	327
RefPlus	69
motifRG	40
PGSEA	83
oneChannelGUI	48
virtualArray	12
CRImage	139
RMassBank	153
gpls	250
PREDA	125
MineICA	121
SpeCond	128
inSilicoMerging	34
maPredictDSC	108
CancerMutationAnalysis	44
cellHTS	40
Genominator	47
microRNA	203
GraphAlignment	104
LMGene	45
HiTC	180
seqbias	72
NuPoP	120
HCsnip	32
chroGPS	45
lmdme	111
netresponse	126
nnNorm	121
casper	111
prot2D	29
dyebias	128
rTANDEM	40
a4Classif	143
charm	52
CexoR	117
flowQB	39
CNVrd2	114
TargetScore	119
SMAP	66
flowPeaks	196
DASiR	26
MiRaGE	115
DEDS	43
mosaics	207
lapmix	105
DNaseR	8
HybridMTest	151
SomatiCA	26
SLGI	53
LiquidAssociation	119
GSEAlm	135
inSilicoDb	33
bigmemoryExtras	36
MantelCorr	99
flowQ	37
rMAT	41
HTSeqGenie	75
openCyto	634
QUALIFIER	42
GeneGA	93
rSFFreader	32
dualKS	48
externalVector	11
PatientGeneSets	6
Rredland	7
GeneR	14
GeneTraffic	9
flowMatch	121
RdbiPgSQL	10
SomaticSignatures	202
Mirsynergy	33
biosvd	39
DMRcate	1059
EDDA	37
sapFinder	37
ASSIGN	155
massiR	109
Basic4Cseq	117
FRGEpistasis	97
nondetects	70
CompGO	33
GeneSpring	10
npGSEA	109
compcodeR	129
COPDSexualDimorphism	4
gaucho	29
MeSHDbi	261
meshr	164
metaseqR	39
ChIPseeker	1892
blima	109
MethylAid	132
wavClusteR	106
MoPS	25
RGSEA	111
flowClean	230
cosmiq	182
msQC	0
flowDensity	288
DOQTL	27
stam	6
keggorth	6
MultiMed	100
ballgown	577
STAN	37
GeneTS	6
systemPipeR	1206
metagene	45
seqplots	35
erccdashboard	126
MSGFgui	31
focalCall	26
riboSeqR	110
GOsummaries	56
Metab	125
pepXMLTab	103
simulatorZ	30
EBSeqHMM	54
IdeoViz	115
TSCAN	639
AIMS	384
gespeR	102
xcms	1717
affyio	8052
arrayQualityMetrics	458
clipper	138
CGHregions	137
GeneNetworkBuilder	126
GEOquery	9560
geneplotter	4968
EBcoexpress	124
GSEABase	8958
GOstats	1531
RBGL	9278
CNORfeeder	124
betr	41
VariantAnnotation	11724
sRAP	41
qvalue	18321
Rcade	49
pvca	268
qusage	399
Rchemcpp	32
RBioinf	125
pRoloc	267
qpcrNorm	127
clusterStab	136
factDesign	122
farms	65
flowClust	774
flowFit	35
FunciSNP	39
genArise	108
biomaRt	22362
rhdf5	20430
maskBAD	115
matchBox	95
MCRestimate	46
MeasurementError.cor	105
MergeMaid	50
metaArray	50
metagenomeSeq	1607
MethylSeekR	184
methylumi	1515
multtest	12146
affyPara	51
AGDEX	121
aroma.light	1932
vsn	5081
xmapbridge	104
sizepower	117
DiffBind	1089
intansv	132
maSigPro	305
GenomicRanges	44818
DSS	825
hapFabia	115
chipenrich	158
cummeRbund	262
BAC	44
stepNorm	117
SQUADD	57
TransView	96
safe	663
SCAN.UPC	191
SigFuge	113
siggenes	3322
staRank	90
TCC	254
ternarynet	103
categoryCompare	124
CGHcall	390
BUS	120
frma	166
ConsensusClusterPlus	2989
marray	1935
a4Preproc	185
htSeqTools	42
BAGS	119
goProfiles	154
Starr	44
ncdfFlow	1098
annmap	114
flowMerge	160
RCytoscape	33
gprege	36
GraphAT	131
annotationTools	145
cellHTS2	206
PICS	152
Risa	198
SLqPCR	120
BiRewire	183
bridge	48
PAnnBuilder	44
pathRender	124
a4Core	189
RPA	134
Heatplus	489
GeneticsDesign	42
affyILM	134
AffyRNADegradation	116
HMMcopy	351
RSVSim	115
Rtreemix	126
rTRM	168
rTRMui	109
sigaR	38
SNPchip	51
affxparser	1566
iterativeBMAsurv	104
GOSemSim	18690
OrganismDbi	2917
FGNet	128
GeneExpressionSignature	136
EasyqpcR	42
KEGGprofile	49
CellNOptR	208
chipseq	642
flipflop	34
dexus	45
cleaver	234
snapCGH	87
LBE	213
yaqcaffy	44
OTUbase	117
SRAdb	443
plw	49
KEGGgraph	5410
RCASPAR	94
copynumber	134
ppiStats	56
goTools	121
pint	35
plethy	48
MmPalateMiRNA	43
occugene	104
NOISeq	610
VegaMC	111
RNAinteract	95
RRHO	130
NarrowPeaks	41
nudge	37
diffGeneAnalysis	109
affyContam	147
Harshlight	132
RMAPPER	12
RmiR	44
attract	136
a4Reporting	143
hpar	285
OutlierD	46
dagLogo	130
gaga	135
gCMAP	42
PROMISE	133
ABarray	142
neaGUI	22
KEGGREST	35976
nem	55
SPIA	614
Streamer	117
MANOR	121
GeneAnswers	54
GEWIST	95
sscore	59
qpgraph	196
RamiGO	31
ddCt	144
msmsEDA	287
HilbertVis	198
flowPlots	103
iBBiG	136
agilp	135
tspair	48
gaggle	69
phenoDist	32
DEGraph	106
inveRsion	38
waveTiling	41
CAMERA	469
exomeCopy	252
bsseq	1479
DBChIP	46
ArrayTools	49
coGPS	113
GenomicAlignments	23454
apComplex	125
maDB	19
predictionet	40
matchprobes	9
AnnBuilder	8
iFlow	7
SemSim	5
PhenStat	109
geneRxCluster	116
flowBin	118
RTools4TB	7
GenomeInfoDb	55792
GOTHiC	120
savR	39
ELBOW	35
CopyNumber450k	21
sangerseqR	840
AtlasRDF	22
ABSSeq	165
QDNAseq	364
UNDO	105
ChIPQC	374
makePlatformDesign	8
GenomicFiles	1283
fastLiquidAssociation	106
alsace	36
flowCyBar	99
NetPathMiner	97
S4Vectors	55488
DupChecker	22
RUVSeq	908
Polyfit	32
pRolocGUI	138
RSNPper	9
Rintact	7
Pbase	29
MEIGOR	116
mQTL.NMR	26
SemDist	96
proteoQC	28
arrayMagic	7
ClassifyR	344
iSPlot	5
M3D	26
MethylMix	136
rain	137
flowcatchR	116
MAIT	178
derfinderPlot	157
SigCheck	96
ToPASeq	30
mvGST	24
MBAmethyl	82
hiReadsProcessor	112
BridgeDbR	113
seqTools	143
MGFM	104
MPFE	87
specL	108
NGScopy	25
saps	14
rgsepd	97
SAGElyzer	7
BeadExplorer	5
QuartPAC	92
gQTLBase	31
ChromoViz	6
AnalysisPageServer	26
cpvSNP	106
sincell	106
ggtree	21931
Rhtslib	24544
muscle	356
chromDraw	104
canceR	137
immunoClust	112
rcellminer	124
cogena	127
GoogleGenomics	21
mogsa	244
pandaR	145
soGGi	381
CopywriteR	44
NanoStringQCPro	46
pwOmics	166
pmm	97
seq2pathway	201
similaRpeak	105
HIBAG	147
SummarizedExperiment	39585
RTCGAToolbox	526
IONiseR	117
rnaseqcomp	107
genotypeeval	35
destiny	647
variancePartition	965
mirIntegrator	113
motifbreakR	229
acde	111
SWATH2stats	100
TarSeqQC	35
SISPA	39
iSNetwork	4
GUIDEseq	126
CNPBayes	23
applera	3
bim	4
GenomeBase	2
sbgr	11
ABAEnrichment	31
biobroom	245
DNABarcodes	170
MEAL	128
LedPred	86
XBSeq	29
reposTools	2
rfcdmin	3
SNAData	2
scde	399
FamAgg	106
lpsymphony	956
kimod	14
normalize450K	84
RnaSeqSampleSize	138
GreyListChIP	1002
IVAS	115
ProtGenerics	11583
BubbleTree	123
netbenchmark	25
bamsignals	1023
RUVcorr	102
conumee	197
RBM	102
RnBeads	302
cytofkit	33
diggit	99
ENmix	278
ensembldb	9798
RNAprobR	27
skewr	93
flowVS	142
MatrixRider	103
ELMER	214
CNVPanelizer	107
ropls	1152
DeMAND	87
Prize	25
metaX	12
NanoStringDiff	126
miRLAB	116
PGA	28
OGSA	23
iGC	101
iCheck	100
pathVar	34
synlet	96
DiffLogo	115
subSeq	112
fCI	99
metagenomeFeatures	27
BBCAnalyzer	106
myvariant	120
RiboProfiling	134
SEPA	20
y2hStat	3
consensusSeekeR	118
iCOBRA	266
biomformat	5494
transcriptR	109
BioQC	151
profileScoreDist	86
coMET	97
gdsfmt	2078
MeSHSim	14
Cardinal	237
rGREAT	650
parglms	95
sidap	0
BrowserViz	172
LEA	596
ComplexHeatmap	15661
regioneR	1904
DMRcaller	129
SELEX	111
edge	139
OmicsMarkeR	26
msa	1776
R3CPET	99
sigsquared	100
InPAS	115
LowMACA	35
gtrellis	159
MethTargetedNGS	98
CausalR	109
TCGAbiolinks	4249
Oscope	116
ldblock	131
RTCGA	490
LOLA	275
ProteomicsAnnotationHubData	26
Guitar	170
mtbls2	0
widgetInvoke	5
SNPhood	106
GeneBreak	107
miRcomp	104
eudysbiome	94
FindMyFriends	30
gcatest	117
HilbertCurve	127
mmgmos	4
DChIPRep	27
multiClust	123
mAPKL	35
birte	22
CODEX	138
seqPattern	784
RCyjs	108
TPP	144
SIMAT	104
BrowserVizDemo	15
diffHic	144
FISHalyseR	96
EMDomics	122
ENCODExplorer	30
FlowRepositoryR	30
SVM2CRM	24
BEclear	119
CAnD	31
GENESIS	359
podkat	108
TIN	99
caOmicsV	23
RareVariantVis	109
hierGWAS	105
rCGH	138
ChIPComp	104
erma	147
AnnotationHubData	369
INSPEcT	108
traseR	107
SICtools	90
DAPAR	152
dupRadar	153
RCy3	923
Imetagene	27
EnrichedHeatmap	587
GEOsearch	15
lfa	287
exprExternal	3
goCluster	2
OperaMate	16
Path2PPI	104
Prostar	118
R4RNA	633
globalSeq	90
dcGSA	86
TimerQuant	0
systemPipeRdata	0
CrispRVariants	132
GSALightning	80
PanVizGenerator	19
ggcyto	838
splineTCDiffExpr	1
IHW	702
iCARE	175
SMITE	92
Mergeomics	102
contiBAIT	49
dada2	2356
ExpressionAtlas	221
HDF5Array	14832
doppelgangR	198
miRNAmeConverter	97
SwathXtend	95
DEFormats	258
debrowser	155
AneuFinder	127
scran	4759
DRIMSeq	297
Linnorm	220
pbcmc	9
LymphoSeq	105
MultiDataSet	1185
epivizrServer	134
ImmuneSpaceR	51
Director	69
netprioR	81
covRNA	93
fgsea	18579
qsea	103
MODA	92
ImpulseDE	11
SNPediaR	81
ASAFE	84
geneplast	124
maftools	2485
FunChIP	50
MADSEQ	96
RCAS	149
CancerSubtypes	77
eegc	48
LINC	13
SIMLR	216
CancerInSilico	28
SPLINTER	90
MAST	2063
psichomics	102
fCCAC	93
StarBioTrek	46
flowPloidy	98
MoonlightR	115
GOpro	145
KEGGlincs	104
yamss	100
chimeraviz	137
samExploreR	15
JunctionSeq	21
flowAI	559
tofsims	19
EWCE	259
tximport	3407
clustComp	102
scater	7001
cellity	101
ExperimentHubData	281
MethPed	92
EpiCluster	0
ISoLDE	73
genphen	19
OncoScore	102
PCAN	97
Glimma	1066
isomiRs	158
CINdex	98
EGSEA	261
diffloop	33
EGAD	101
epivizrStandalone	94
MMDiff2	93
normr	163
DeepBlueR	37
CytoML	445
ccmap	114
clusterExperiment	313
ASpli	138
recount	397
alpine	39
GRmetrics	123
YAPSA	119
gCrisprTools	97
philr	181
MetaboSignal	146
BiocWorkflowTools	192
synergyfinder	236
bigmelon	101
yarn	135
anamiR	13
TVTB	101
CCPROMISE	99
M3Drop	600
matter	233
proFIA	25
BUMHMM	116
gcapc	91
DelayedArray	41826
sparseDOSSA	35
ramwas	120
coseq	170
cellTree	25
sevenbridges	102
EmpiricalBrownsMethod	134
GenVisR	296
ROTS	226
chromPlot	218
ExperimentHub	7712
garfield	85
nucleoSim	93
Uniquorn	97
psygenet2r	104
CountClust	22
sscu	86
EBSEA	87
BatchQC	140
QUBIC	147
pcaExplorer	412
pqsfinder	137
BgeeDB	155
epivizrData	138
oppar	105
dSimer	12
covEB	89
MetCirc	114
esetVis	101
MGFR	96
AMOUNTAIN	104
methylKit	640
CVE	16
LOBSTAHS	126
rDGIdb	89
chromstaR	107
switchde	91
geneAttribution	95
CellMapper	88
BaalChIP	103
geneXtendeR	97
uSORT	94
statTarget	124
MutationalPatterns	314
annotatr	478
HelloRanges	140
phosphonormalizer	77
MWASTools	164
IWTomics	106
clusterSeq	98
RJMCMCNucleosomes	99
Chicago	120
QuaternaryProd	100
SC3	350
BasicSTARRseq	92
RGraph2js	94
metaCCA	131
RImmPort	74
GenRank	13
MBttest	89
biosigner	124
GMRP	91
SpidermiR	54
DNAshapeR	115
bacon	157
recoup	96
splineTimeR	107
MultiAssayExperiment	6342
GenoGAM	21
CONFESS	109
odseq	94
genbankr	66
ClusterSignificance	92
InteractionSet	1964
BadRegionFinder	93
PureCN	184
Harman	170
CHRONOS	96
bioCancer	109
msPurity	105
Pigengene	126
GEM	91
NetCRG	0
sights	98
crossmeta	176
ctsGE	94
GeneGeneInteR	89
IPO	204
BayesKnockdown	88
SVAPLSseq	13
GAprediction	86
Anaquin	94
PharmacoGx	281
signeR	110
readat	15
Pi	58
DEsubs	93
FitHiC	106
regsplice	90
SRGnet	16
meshes	182
crisprseekplus	36
PathoStat	173
BPRMeth	114
GRridge	27
scDD	159
RnaSeqGeneEdgeRQL	4
scone	138
treeio	21020
goSTAG	99
DMRScan	77
geneClassifiers	84
swfdr	101
cellscape	80
timescape	101
Logolas	14
RTNduals	105
Organism.dplyr	417
rqt	74
MaxContrastProjection	15
IntEREst	100
branchpointer	114
netReg	18
GenomicDataCommons	1044
banocc	109
basecallQC	104
flowTime	101
pathprint	14
metavizr	22
PPInfer	209
GA4GHclient	115
ideal	124
TSRchitect	21
heatmaps	289
coexnet	20
IntramiRExploreR	84
mfa	125
SingleCellExperiment	15885
beachmat	16079
oneSENSE	29
diffuStats	103
SCnorm	136
EpiDISH	682
CEMiTool	174
miRsponge	10
seqcombo	85
amplican	119
TFARM	86
seqCAT	100
biobase	1
cbaf	99
trena	29
ANF	98
MetaCyto	110
transcriptogramer	96
chromswitch	29
esATAC	119
PROPS	87
restfulSE	148
ivygapSE	89
gep2pep	89
omicsPrint	97
LineagePulse	34
geoquery	1
rhvdm	0
affyplm	0
TCseq	387
splatter	442
ChIPexoQual	105
REMP	102
MIGSA	22
twoddpcr	90
EventPointer	106
hicrep	11
motifcounter	90
STROMA4	32
AnnotationFilter	10992
BioCor	111
methylInheritance	96
semisup	85
ATACseqQC	391
GA4GHshiny	102
TReNA	3
ndexr	98
DASC	2
methInheritSim	100
motifmatchr	1377
miRBaseConverter	138
Scale4C	101
Rhdf5lib	23548
phenopath	118
scmap	234
epivizrChart	95
RVS	85
BiocSklearn	120
AUCell	2507
openPrimeRui	66
ChIPanalyser	97
multiMiR	273
InterMineR	96
TFHAZ	88
iranges	1
biostrings	1
SeqSQC	178
TnT	65
panelcn.mops	111
methyvim	15
oncomix	87
vulcan	96
rhdf5client	160
ontoProc	243
runibic	99
stageR	199
tenXplore	81
iterClust	40
karyoploteR	804
MCbiclust	94
discordant	115
TCGAbiolinksGUI	34
sampleClassifier	97
GISPA	42
multiOmicsViz	44
epiNEM	149
NADfinder	96
RIVER	92
ImpulseDE2	20
GenomicScores	669
CATALYST	578
IMAS	93
RaggedExperiment	854
pgca	75
RITAN	104
IsoformSwitchAnalyzeR	283
RTNsurvival	95
scoreInvHap	96
OPWeight	86
GENIE3	1258
zFPKM	145
rexposome	119
HiCcompare	260
Onassis	20
DEP	565
SPONGE	82
cytolib	2665
Rbowtie2	283
apeglm	3660
MSstatsQC	96
TMixClust	113
BASiCS	158
scfind	12
openPrimeR	165
chromVAR	1175
bnbc	196
DelayedMatrixStats	15853
anota2seq	110
PathwaySplice	12
scPipe	124
JASPAR2018	5
methimpute	92
pcxn	57
topdownr	101
annbuilder	0
loci2path	96
TFEA.ChIP	114
MAGeCKFlute	355
mimager	100
funtooNorm	99
POST	15
mapscape	76
DaMiRseq	124
wiggleplotr	170
BLMA	108
cydar	122
BioMedR	5
biotmle	95
BiocFileCache	25833
cellbaseR	109
msgbsR	99
zinbwave	887
RProtoBufLib	2657
ClusterJudge	91
consensusOV	129
Doscheda	99
DMCHMM	87
M3C	627
microbiome	1738
IrisSpatialFeatures	5
miRmine	50
bsgenome	0
shortread	0
MIRA	119
slalom	135
progeny	449
mpra	102
bcSeq	91
MetaNeighbor	124
signet	11
GOfuncR	342
biocinstaller	1
flowclust	0
mCSEA	129
srnadiff	86
CHARGE	11
pogos	131
enrichplot	19155
dmrseq	212
MetaGxOvarian	3
SummarizedBenchmark	42
phantasus	212
FELLA	156
hipathia	202
singleCellTK	334
RSeqAn	110
decontam	1653
InTAD	91
igvR	143
perturbatr	13
sevenC	83
singscore	1457
MSstatsQCgui	78
CAGEfightR	251
slingshot	1487
Rmmquant	89
CellTrails	93
CAMTHC	9
methylGSA	148
ipdDb	180
appreci8R	95
scruff	100
miRSM	84
LRBaseDbi	106
DEqMS	266
SIMD	85
sparsenetgls	77
MPRAnalyze	100
COCOA	114
HiCBricks	164
tRNAdbImport	120
ProteoMM	105
artMS	110
compartmap	38
RNASeqR	13
rScudo	84
DelayedDataFrame	92
deco	17
plpe	0
annotationdbi	1
rbgl	1
tkwidgets	1
genomicfeatures	1
dnacopy	1
seqlogo	0
DropletUtils	2472
RGMQL	64
snpmatrix	1
RcisTarget	1032
ChIPSeqSpike	16
Trendy	91
omicplotR	97
kissDE	97
DominoEffect	91
iSEE	506
martini	90
TissueEnrich	245
GSEABenchmarkeR	115
CytoDx	113
PowerExplorer	13
Rgin	16
rWikiPathways	391
iCNV	97
SEPIRA	28
SparseSignatures	93
mdp	86
ccfindR	111
RNAdecay	74
GDSArray	229
SIAMCAT	154
onlineFDR	70
kmknn	0
MetID	90
coRdon	190
tximeta	1017
NormalyzerDE	199
GeneAccord	18
HPAanalyze	162
hierinf	72
FCBF	43
countsimQC	282
OMICsPCA	99
IsoCorrectoR	115
levi	72
LoomExperiment	606
MTseeker	5
PrecisionTrialDrawer	16
topgo	0
hmdbQuery	104
roma	2
powerTCR	325
MACPET	17
DEScan2	102
diffcoexp	169
vidger	146
tRNAscanImport	98
seqsetvis	112
TFutils	103
ChIC	22
Sconify	89
DEsingle	265
SDAMS	94
diffcyt	461
missRows	89
GARS	95
GateFinder	95
plyranges	1214
TCGAutils	738
netSmooth	101
TxRegInfra	14
BiocVersion	59927
Ularcirc	96
maser	154
GIGSEA	78
qPLEXanalyzer	92
condcomp	6
ACE	124
OUTRIDER	202
INDEED	70
strandCheckR	90
SCBN	101
REBET	85
multiHiCcompare	159
ERSSA	91
BiocNeighbors	10923
KinSwingR	85
glmSparseNet	211
pkgdeptools	0
MSstatsTMT	286
bayNorm	115
mixOmics	2644
abseqR	93
transite	94
tRNA	138
universalmotif	847
PepsNMR	133
ADAM	183
decompTumor2Sig	140
IsoCorrectoRGUI	85
scTensor	106
DNABarcodeCompatibility	72
degseq	1
genomicranges	0
scFeatureFilter	84
omicRexposome	99
BiFET	96
drawProteins	193
GDCRNATools	237
TTMap	89
CTDquerier	91
DEComplexDisease	19
gsean	94
CellScore	88
iteremoval	16
BEARscc	76
ddPCRclust	111
MDTS	80
GeneStructureTools	110
scmeth	100
adaptest	12
ASICS	125
BioNetStat	79
IMMAN	82
RandomWalkRestartMH	58
BiocOncoTK	75
OmaDB	242
ORFik	202
iasva	96
sigFeature	280
FastqCleaner	113
gwasurvivr	117
icetea	85
sesame	816
slinky	16
mlm4omics	5
NBSplice	20
celaref	103
BUScorrect	88
brainImageR	5
EnhancedVolcano	4967
plotGrouper	78
XINA	80
MetNet	90
consensus	83
BiocPkgTools	156
FoldGO	35
nuCpos	83
primirTSS	89
breakpointR	98
gpart	21
ExCluster	72
edger	1
cicero	240
HIREewas	86
AffiXcan	89
consensusDE	98
AssessORF	176
QSutils	149
NeighborNet	30
Wrench	1617
BDMMAcorrect	34
TimeSeriesExperiment	18
cTRAP	102
cntools	1
logitt	1
VCFArray	93
gostats	1
category	1
rgraphviz	2
bayseq	1
PAIRADISE	122
Rhisat2	220
adductomicsR	90
bigPint	26
topconfects	178
phemd	27
SpectralTAD	106
Modstrings	196
CoRegFlux	7
PrInCE	89
RcwlPipelines	112
CHETAH	123
evaluomeR	91
qsmooth	172
MOFA	9
ssrch	83
PAST	83
infercnv	1128
celda	746
VennDetail	287
pipeFrame	152
TPP2D	85
XCIR	10
KnowSeq	93
AWFisher	92
Maaslin2	965
onechannelgui	1
GenomicOZone	107
SigsPack	80
calm	71
SharedObject	137
microbiomeDASim	82
pwrEWAS	23
debCAM	93
methylCC	100
flowSpy	7
MethCP	13
ssPATHS	78
tradeSeq	543
MACSQuantifyR	69
MSstatsSampleSize	21
oppti	75
RNAsense	76
cliqueMS	119
selectKSigs	81
rsamtools	1
epihet	16
SpatialCPie	105
arrayexpress	0
RCM	97
SMAD	79
Rcwl	111
BiocSingular	12641
alevinQC	114
fishpond	261
CNVRanger	117
miRspongeR	75
qckitfastq	95
Structstrings	153
PoTRA	13
GNET2	80
batchelor	3868
DeMixT	125
proBatch	27
TNBC.CMS	43
survtype	83
CellMixS	110
ngsReports	102
profileplyr	248
DiscoRhythm	100
scRecover	85
netboost	75
scMerge	500
metagene2	103
SubCellBarCode	91
gpuMagic	78
RNAmodR	120
RNAmodR.AlkAnilineSeq	89
SQLDataFrame	83
TOAST	433
scGPS	111
Autotuner	10
scBFA	91
AlphaBeta	83
muscat	530
brendaDb	86
SingleR	4183
deltaCaptureC	82
gramm4R	8
MOSim	92
idr2d	83
CrossICC	5
biscuiteer	101
ASpediaFI	17
scPCA	112
CNVfilteR	88
HCAExplorer	7
MMUPHin	162
DMCFB	87
scTGIF	192
mitch	85
geometadb	1
graper	80
iterativebmasurv	0
cytofast	11
OVESEG	98
GAPGOM	16
cola	145
Melissa	85
rmelting	87
BioMM	18
atSNP	113
hypeR	130
CellBench	153
pram	89
DepecheR	98
pathwayPCA	101
AMARETTO	192
sitePath	89
sRACIPE	95
RepViz	92
OmicsLonDA	21
SynMut	81
animalcules	241
HCABrowser	8
StructuralVariantAnnotation	238
dcanr	158
mnem	150
enrichTF	51
MMAPPR2	25
RNAmodR.ML	87
MetaVolcanoR	55
SBGNview	188
gemini	74
chippeakanno	0
circRNAprofiler	104
SCANVIS	92
HiLDA	95
proDA	255
IgGeneUsage	79
fcScan	95
VariantExperiment	72
sojourner	18
flowSpecs	110
SEtools	205
ReactomeGSA	238
LinkHD	93
ALPS	10
SAIGEgds	124
blacksheepr	97
schex	186
DEWSeq	90
scDblFinder	1558
OmnipathR	678
methrix	115
fcoex	25
MEB	80
GmicR	93
gscreend	84
brainflowprobes	44
BiocSet	328
cummerbund	1
ceRNAnetsim	72
arrayqualitymetrics	0
MBQN	88
geneticsbase	0
gseabase	0
PCAtools	1216
CluMSID	89
divergence	76
doseR	87
scds	483
projectR	110
Xeva	150
mbkmeans	379
BANDITS	113
ADAMgui	103
HumanTranscriptomeCompendium	55
scAlign	19
NBAMSeq	179
lipidr	153
GladiaTOX	79
nanotatoR	46
CopyNumberPlots	155
TreeSummarizedExperiment	2018
RNAmodR.RiboMethSeq	93
ViSEAGO	140
ncGTW	157
PhyloProfile	105
BUSpaRse	219
Qtlizer	81
APAlyzer	106
lionessR	89
Spaniel	104
waddR	73
target	86
signatureSearch	185
PERFect	33
peakPantheR	87
pulsedSilac	11
BioTIP	103
GCSscore	20
netboxr	14
widgettools	1
biomart	1
dearseq	231
BgeeCall	76
SimFFPE	76
DAMEfinder	89
DIAlignR	64
structToolbox	135
basilisk.utils	3265
ctgGEM	9
scTHI	76
eisaR	135
combi	112
RNAAgeCalc	98
rhdf5filters	19541
cytomapper	332
sparseMatrixStats	15511
TBSignatureProfiler	90
CARNIVAL	162
dpeak	25
ROSeq	88
peco	81
rfaRm	76
methylSig	113
GGPA	74
spqn	77
AnVIL	537
metaseqR2	108
weitrix	85
simplifyEnrichment	903
PeacoQC	249
multicrispr	88
multiGSEA	158
MouseFM	179
RadioGx	95
wpm	87
UTAR	0
SpatialExperiment	4186
escape	423
MultiBaC	106
transomics2cytoscape	96
hummingbird	75
QFeatures	2551
UMI4Cats	85
uncoverappLib	90
RIPAT	27
Rfastp	166
metabolomicsWorkbenchR	106
FScanR	19
SCATE	27
ANCOMBC	1205
FilterFFPE	88
aggregateBioVar	98
tomoda	85
AnVILBilling	77
CellaRepertorium	37
GWAS.BAYES	86
dasper	14
densvis	1445
tidySingleCellExperiment	229
bambu	286
ExperimentSubset	100
AlpsNMR	102
mina	69
SplicingFactory	73
CNVgears	33
bnem	90
mumosa	98
PoDCall	68
BumpyMatrix	509
parallel	1
tcltk	1
calib	0
facets	0
ttgsea	84
base	1
grDevices	1
brew	41
RColorBrewer	10
omicsmarker	0
prostar	0
rlang	443
simpleSingleCell	0
sigpathway	1
CSSQ	79
PubScore	10
packFinder	88
frenchFISH	67
tscR	15
dittoSeq	1431
tidybulk	320
receptLoss	74
ribor	84
ribosomeProfilingQC	112
Dune	73
ROCpAI	69
vasp	6
spicyR	186
HIPPO	81
BiocDockerManager	14
glmGamPoi	4894
scry	270
SingleCellSignalR	242
FRASER	139
CoreGx	330
distinct	254
MsCoreUtils	3659
BSgenome.Hsapiens.UCSC.hg19	7
TADCompare	108
DegNorm	88
SPsimSeq	191
Rtpca	93
scDataviz	106
RegEnrich	95
KEGG.db	1
BiocIO	19697
zellkonverter	1440
Nebulosa	1226
idpr	94
ISAnalytics	74
rsemmed	71
ncRNAtools	83
proActiv	97
pageRank	81
ChromSCape	91
MSPrep	178
MSstatsTMTPTM	6
MSstatsConvert	475
MSEADbi	6
ADImpute	102
NanoMethViz	119
VERSO	77
megadepth	158
marr	81
biocthis	254
famat	88
GSgalgoR	79
NewWave	115
SpatialDecon	222
RLassoCox	82
flowGraph	75
PFP	11
stats	1
DEXICA	0
vcfR	1
graphat	1
datasets	1
grid	1
dichromat	3
magrittr	10
sendmailR	1
biobtreeR	76
easyreporting	85
EnMCB	87
scMAGeCK	10
reconsi	77
netDx	55
struct	166
GeneTonic	339
SCOPE	93
clustifyr	177
TreeAndLeaf	147
TAPseq	90
rrvgo	530
cmapR	426
exomePeak2	88
EpiTxDb	98
GCSConnection	9
NoRCE	84
sarks	79
BRGenomics	96
MatrixGenerics	40382
SynExtend	88
snapcount	87
scHOT	87
CiteFuse	108
optimalFlow	94
scClassify	142
PloGO2	49
sangeranalyseR	209
BrainSABER	13
flowCut	142
HCAMatrixBrowser	3
fmrs	123
corral	100
ToxicoGx	101
pipeComp	87
CytoTree	15
scCB2	88
geneLenDataBase	10
ILoReg	83
MesKit	109
hgu133plus2.db	7
Omixer	83
HPAStainR	13
GO.db	14
org.Hs.eg.db	15
Homo.sapiens	6
ggtreeExtra	1085
VplotR	89
Spectra	1950
ResidualMatrix	3671
preciseTAD	92
periodicDNA	77
SeqGate	82
MSstatsPTM	213
GCSFilesystem	8
PhosR	143
MethReg	81
systemPipeShiny	90
GenomeInfoDbData	18
customCMPdb	94
musicatk	113
tidySummarizedExperiment	354
MOGAMUN	80
microbiomeExplorer	102
BayesSpace	266
AnVILPublish	88
SCFA	74
moanin	194
ReactomeContentService4R	105
VarCon	75
GenomicDistributions	126
splines	1
stats4	1
tools	1
utils	1
degraph	1
methods	1
compiler	1
labeling	84
pga	0
hicbricks	0
rstudio	1
string	0
NPARC	100
CeTF	108
pmp	133
rSWeeP	84
MEAT	84
basilisk	3467
gmoviz	82
iSEEu	153
MOMA	88
regutools	103
MicrobiotaProcess	505
ExploreModelMatrix	194
timeOmics	113
GPA	83
LACE	179
randRotation	72
OpenStats	72
cBioPortalData	391
scuttle	9276
getDEE2	81
GWENA	249
GSEAmining	92
padma	87
bluster	5625
infinityFlow	110
PFAM.db	11
TxDb.Hsapiens.UCSC.hg19.knownGene	6
rebook	146
POMA	192
snifter	151
TileDBArray	93
msImpute	226
TimiRGeN	38
recountmethylation	106
nearBynding	80
velociraptor	166
Informeasure	76
scp	231
spatialHeatmap	231
rnaEditr	90
MOFA2	525
scRepertoire	571
cfDNAPro	106
lefser	519
Herper	143
recount3	289
metabCombiner	125
metapod	4780
shinyepico	92
CAEN	74
censcyt	87
BSgenome.Hsapiens.UCSC.hg38	10
GEOfastq	101
nempi	88
affio	0
graphics	1
bitops	99
ga4ghclient	0
cindex	0
RiboDiPA	83
SOMNiBUS	77
OSCA.basic	18
mulcom	1
autonomics	80
lisaClust	158
PhIPData	99
IlluminaHumanMethylation450kmanifest	6
mia	1460
barcodetrackR	83
drugTargetInteractions	85
interacCircos	85
DelayedRandomArray	90
Rbec	87
awst	80
diffUTR	76
sechm	178
POWSC	91
ReactomeGraph4R	54
systemPipeTools	85
HubPub	135
cosmosR	111
RCSL	79
csawBook	4
ebimage	1
cageminer	90
scShapes	72
VAExprs	73
genomicInstability	91
veloviz	74
ggspavis	219
svaRetro	86
scAnnotatR	192
rGenomeTracks	78
imcRtools	244
MicrobiomeProfiler	149
cliProfiler	77
ODER	9
Cepo	163
epistack	80
deconvR	97
mosbi	77
biodbLipidmaps	40
TargetDecoy	89
ggmanh	258
CNVMetrics	82
rprimer	96
crisprBase	152
coMethDMR	96
ichorCNA	0
BOBaFIT	88
VGAM	15
ramr	77
SCArray	101
GeomxTools	410
planet	203
fobitools	87
Travel	5
PhenoGeneRanker	63
MsBackendMassbank	104
dce	90
hca	84
miQC	136
OSCA.advanced	13
OSCA	5
dir.expiry	3343
condiments	128
memes	232
wppi	61
CytoGLMM	95
cyanoFilter	84
MungeSumstats	978
treekoR	96
cbpManager	81
XNAString	80
BloodGen3Module	133
vissE	132
KBoost	69
decoupleR	1175
HGC	87
MQmetrics	25
MSstatsLOBD	80
m6Aboost	73
DelayedTensor	82
scanMiR	101
FLAMES	106
FindIT2	84
mitoClone2	103
iPath	68
GEOexplorer	86
BentoBox	0
traviz	75
spatialDE	126
BioPlex	8
methylclock	184
ProteoDisco	82
sparrow	323
MsBackendRawFileReader	92
biodbUniprot	77
pairkat	105
scTreeViz	79
synapsis	69
biodbKegg	74
pengls	68
GeoDiff	97
NxtIRFcore	12
hermes	237
netZooR	86
GBScleanR	101
ScaledMatrix	12434
VaSP	89
TraRe	10
MetaboCoreUtils	1873
MsFeatures	1505
MAGAR	148
IRISFGM	28
satuRn	276
InterCellar	97
sitadela	79
OSCA.multisample	15
ComPrAn	79
ModCon	69
PDATK	176
SingleRBook	3
miaViz	292
airpart	95
LRcell	77
ptairMS	77
granulator	137
DeepPINCS	83
immunotation	80
miloR	391
tLOH	75
ppcseq	82
mistyR	123
biodb	167
epialleleR	88
bayespeak	0
csdR	73
BindingSiteFinder	85
MAI	86
plotgardener	265
bugsigdbr	195
rmspc	78
tanggle	101
atena	94
tripr	76
monaLisa	186
HPiP	81
biodbChebi	95
cytoKernel	93
Cogito	80
microbiomeMarker	375
scReClassify	89
miaSim	100
easier	121
CellBarcode	98
TRESS	94
targetsearch	0
mfuzz	0
CONSTANd	78
scClassifR	5
NanoStringNCTools	397
InteractiveComplexHeatmap	400
ORFhunteR	81
MACSr	124
TrajectoryUtils	1938
Summix	75
HiCDCPlus	117
TrajectoryGeometry	67
MsBackendMgf	420
geva	79
OSCA.workflows	31
CelliD	207
OSCA.intro	52
methylscaper	111
midasHLA	80
BioNERO	265
CIMICE	80
fedup	79
conclus	9
epidecodeR	77
CNViz	84
mirTarRnaSeq	92
cellmigRation	74
tricycle	229
FEAST	146
DExMA	88
supersigs	163
multiSight	20
quantiseqr	502
fgga	77
SingleMoleculeFootprinting	89
MatrixQCvis	188
GenomicSuperSignature	95
epigraHMM	88
msqrob2	177
rawrr	203
spiky	74
BUSseq	87
dStruct	74
svaNUMT	84
Dino	84
segmenter	93
spatzie	73
NanoTube	107
NeuCA	53
scanMiRApp	78
enhancerHomologSearch	79
transformGamPoi	104
ggmsa	534
metapone	84
orthogene	333
KaryoploteR	0
nullranges	182
benchdamic	95
scatterHatch	74
MSstatsLiP	107
CyTOFpower	62
netOmics	26
biodbHmdb	90
txcutr	75
RLSeq	31
surfaltr	77
RiboCrypt	82
sccomp	121
BSgenome.Hsapiens.NCBI.GRCh38	1
clusterprofiler	1
semsim	0
PanomiR	89
CompoundDb	260
MuData	91
single	45
ASURAT	90
cytoMEM	123
DepInfeR	73
extraChIPs	112
mbOmic	9
terraTCGAdata	89
biodbNci	86
BiocBaseUtils	6807
devtools	17
katdetectr	87
proteasy	24
scMET	74
RedisParam	71
MASS	375
goSorensen	91
bookdown	32
evaluate	381
globals	61
zenith	130
uwot	129
hdrcde	6
colorRamps	10
ggpointdensity	6
blme	6
IlluminaHumanMethylationEPICanno.ilm10b4.hg19	6
FDb.InfiniumMethylation.hg19	6
truncnorm	3
FlowSorted.CordBloodCombined.450k	10
isva	6
org.Rn.eg.db	10
ccdata	10
lsa	7
randomcoloR	6
coloc	18
agricolae	10
waiter	10
gsmoothr	6
R.devices	8
Rsolnp	1
NADA	6
Rfast	15
RcppAnnoy	37
docopt	6
sparsesvd	16
Signac	15
JASPAR2020	6
furrr	12
tidytree	30
sparklyr	11
scales	97
hms	33
susieR	18
knitr	256
checkmate	233
memoise	9
sessioninfo	2
remotes	156
fansi	144
Matrix	423
tidyr	257
readr	104
packrat	11
rsconnect	27
shinyjs	4
htmltools	303
webshot	21
desc	87
pkgload	305
plyr	78
formatters	7
blob	43
plotly	88
BiocManager	342
campsismod	0
deSolve	4
webmockr	0
epiR	2
evd	4
xaringanthemer	0
dittodb	0
fork	1
gamlss.dist	3
forecast	7
ggPMX	1
ipaddress	0
lpSolveAPI	1
klaR	4
jsTreeR	1
interp	12
multcomp	127
pins	7
pmtables	1
precommit	1
pdftools	4
partitions	0
randtoolbox	0
paletteer	13
profile	0
R.rsp	1
prismatic	9
pointblank	1
recipes	50
Rsmlx	0
Rdpack	26
rhub	3
rclipboard	7
reda	0
s2	35
roxygen2	182
spatialreg	0
spaMM	0
sensitivity	1
tweenr	33
spam	10
tracee	1
statmod	2
vaultr	1
terra	30
RAthena	10
gplots	160
RPostgres	105
RandomFields	0
RandomFieldsUtils	0
RcppParallel	27
bit64	78
bit	106
BMA	1
leaps	9
geosphere	11
stringdist	16
rpart	54
xmlparsedata	0
mice	13
mlbench	11
loo	15
odbc	20
paws.security.identity	15
r2d3	1
rematch2	1
rcdk	10
plotmo	2
enc	0
expm	11
extraTrees	0
rJava	135
subselect	0
superpc	0
survMisc	1
yardstick	20
paws.cost.management	15
paws.storage	132
FNN	169
nloptr	49
SparseM	61
sp	73
sfsmisc	4
corpcor	2
dtw	0
ggsignif	9
here	2
perm	8
samr	5
restfulr	7
phenomis	87
omada	72
Markdown	0
regioneReloaded	83
xaringanExtra	0
CompQuadForm	1
correlation	4
diagram	1
DiceDesign	14
DiscriMiner	0
doRNG	3
diveRsity	0
EasyABC	0
elliptic	1
easypar	0
ergm.count	0
expsmooth	0
fdrtool	7
fma	0
future.apply	186
gada	0
fracdiff	5
gclus	1
gamlss.tr	0
gamlss.data	2
gdistance	0
ggvis	1
ggforestplot	0
GillespieSSA	0
gllvm	0
glmmML	0
GUTS	0
h2o	3
GSA	1
hypergeo	1
HWxtest	0
imagerExtra	0
janeaustenr	3
intervals	7
Iso	0
interpretR	0
jiebaR	0
KODAMA	0
LaplacesDemon	1
ks	5
languageserver	1
labdsv	0
leafcutter	0
logspline	1
MALDIquant	6
mboost	3
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MIIVsem	0
mobster	0
mitml	1
mltools	0
MutationTimeR	0
ncbit	0
mvabund	0
network	2
np	0
npsurv	1
oompaData	6
operator.tools	1
pan	1
penalized	0
peakPick	0
tfruns	13
aplot	43
formatR	23
openssl	421
SPIAT	143
vapour	0
HiContacts	138
org.Sc.sgd.db	1
scBubbletree	84
msigdbr	6
ggtreeDendro	86
Voyager	188
gtable	201
HandTill2001	1
ipred	28
highr	152
magrene	76
epistasisGA	73
bench	0
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Illumina450ProbeVariants.db	1
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Exact	3
MCMCglmm	1
MCMCpack	3
cardelino	90
cxAnalysis	0
Rcgmin	1
SuperLearner	1
asht	0
octad	86
simpleSeg	92
FuseSOM	81
htmlwidgets	112
codetools	89
rj.gd	1
gsrc	0
ASExtras4	0
wk	35
BiasedUrn	12
spatstat.utils	31
spatstat.geom	41
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bigrquery	14
planttfhunter	94
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N2R	1
tidyjson	1
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GOplot	0
conquer	2
esquisse	16
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smoothHR	0
padr	1
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writexl	35
visNetwork	3
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rngtools	2
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proj4	5
ncdf4	11
pd.atdschip.tiling	0
units	27
stringfish	7
future.callr	1
purr	0
findpython	11
bigassertr	0
bigreadr	0
circlize	47
shape	67
reshape	2
assertive.properties	3
phylobase	1
PMCMRplus	3
PoissonSeq	0
qgam	0
qrnn	1
rgexf	1
rentrez	0
RMTstat	0
rle	0
rlemon	1
RNeXML	0
RUnit	11
sampling	1
servr	6
shinycssloaders	12
signature.tools.lib.v2.1	0
SOAR	0
startupmsg	1
stabs	0
subplex	1
tclust	1
tensorA	11
TailRank	6
timereg	1
trust	0
tsna	0
tseriesChaos	0
worrms	2
wikitaxa	0
WikipediR	4
xlsxjars	1
abc.data	1
acepack	2
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afex	2
AlgDesign	4
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BayesianTools	0
BayesFactor	2
bigmemory	3
bedr	0
bezier	0
bigsnpr	0
Boruta	0
cgdsr	0
bridgesampling	0
calibrate	1
chemometrics	0
clustree	2
pkgconfig	3
JADE	1
kpmt	0
sjPlot	1
raster	11
biganalytics	0
huxtable	4
keyring	5
timechange	196
rngWELL	0
rxode2et	1
quarto	7
rvg	2
nlmixr2data	1
vcr	0
npde	1
mclogit	0
flowworkspace	1
amgen.okta.client	1
AneuFinderData	0
BSgenome.Mmusculus.UCSC.mm9	0
signature.tools.lib	0
signature.tools.lib.back	0
unbalanced	0
WGSmapp	1
rtkore	1
polysat	0
gWidgets2tcltk	0
rrBLUP	1
clusthaplo	0
sticky	0
forestplot	2
comapr	87
TEKRABber	173
LinTInd	79
crisprBowtie	148
UCell	1485
MBECS	96
xcore	74
TREG	76
PSMatch	1738
rgoslin	122
GenProSeq	69
nnSVG	167
fastreeR	103
qmtools	82
tomoseqr	73
pareg	63
deseq	1
ompBAM	126
GRaNIE	156
crisprBwa	74
scDDboost	78
bsplus	1
syntenet	126
iSEEhex	152
CTSV	86
HiCDOC	100
SpliceWiz	141
deseq2	2
crisprDesign	135
eds	381
xfun	416
DT	116
arrow	22
abaenrichment	0
tibble	22
ggdendro	16
metap	11
scattermore	12
sctransform	11
aws.signature	6
rainbow	9
fda	10
BSgenome.Cfamiliaris.UCSC.canFam3	6
venn	9
FlowSorted.Blood.EPIC	10
shinyBS	7
EnsDb.Hsapiens.v86	8
shinyWidgets	83
shinydashboardPlus	18
aroma.apd	9
R.huge	8
zCompositions	10
dqrng	52
estimability	31
qlcMatrix	16
PRROC	6
qap	11
GenABEL.data	1
GenABEL	1
forcats	18
googlesheets4	27
paws.common	135
sn	12
nlme	219
viridisLite	44
rmarkdown	358
clipr	7
credentials	67
xml2	110
glue	209
cli	358
tidyselect	257
cpp11	249
vroom	96
tzdb	33
future	203
latticeExtra	5
httpuv	299
systemfonts	272
crisprVerse	104
dbplyr	204
class	30
GenomAutomorphism	69
viridis	209
lattice	170
arm	4
bbr	1
binr	0
datamods	17
cmdstanr	1
cem	1
cubature	2
broom.helpers	17
clinPK	0
dfidx	0
workflowsets	13
doMC	2
flexdashboard	1
downlit	117
ggeffects	3
Epi	3
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dm	1
gtsummary	4
ggdist	6
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lavaan	14
lotri	0
metafor	6
nhanesA	0
performance	12
parameters	13
plm	0
partykit	3
plumber	19
pkgdown	151
scico	0
RMariaDB	20
spacetime	2
systemfit	0
spData	8
tarchetypes	5
targets	9
tidymodels	14
tidyverse	19
urca	7
timeDate	41
RJSONIO	15
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seqminer	11
zoo	27
sandwich	14
inline	2
KernSmooth	78
AER	1
Formula	11
car	32
ATACseqTFEA	88
mda	1
mixtools	1
strucchange	1
rcdklibs	11
slider	16
threejs	1
spls	0
earth	3
epitools	0
exactRankTests	1
glmnet	19
rly	0
trimcluster	0
umap	12
paws.application.integration	15
paws.customer.engagement	15
pbmcapply	1
paws.machine.learning	15
paws.networking	15
DRR	1
crosstalk	83
lhs	15
gdata	38
mnormt	13
pbkrtest	49
MatrixModels	55
maptools	17
lifecycle	138
crayon	175
colourpicker	5
deldir	43
lpSolve	8
usethis	178
whisker	20
geoR	0
splancs	11
gmodels	1
glmnetUtils	10
scrime	5
rARPACK	5
ExomeDepth	1
sys	108
EasyCellType	97
cobs	1
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dr	0
dndscv	0
distr	1
dtangle	0
doSNOW	1
DPClust	0
feather	0
extrafont	1
ffbase	0
ff	3
fftw	1
GeneNet	0
ggm	1
goftest	1
hdf5r	12
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hdm	0
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idr	0
ISOcodes	1
kohonen	1
lazy	1
liquidSVM	0
logcondens	0
longitudinal	0
MatchIt	3
metaplus	0
mlegp	0
ordinal	8
peperr	0
PheWAS	0
pdp	1
ggridges	34
leiden	21
crisprViz	113
mime	9
XML	113
jquerylib	1
org.Ss.eg.db	1
gemma.R	93
yaml	279
lazyeval	2
lava	46
DescTools	11
TENxIO	80
lubridate	84
MetaPhOR	94
DBItest	0
OncoBayes2	0
ccImpute	79
RSNNS	0
bbmle	13
AsioHeaders	4
BiocFHIR	76
DNAfusion	79
isoband	29
qtl	2
qtl2	1
weights	3
ghql	0
clustermq	2
officer	25
matrixStats	171
polyclip	80
spatstat.random	38
DMRcatedata	1
ascii	1
sccore	1
grr	1
RcppSpdlog	1
safetyexploreR	0
lixoftConnectors.1	0
scatterpie	43
chron	3
gghighlight	1
latex2exp	1
learnr	4
n1qn1	0
matrixcalc	1
ggtext	3
protolite	1
mets	1
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RSEIS	8
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irr	1
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mouse4302.db	0
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argparse	12
tensorflow	13
MsQuality	87
lambda.r	1
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rjson	45
cowplot	86
profileModel	0
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shinyjqui	1
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plot3Drgl	0
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RInside	0
ritis	0
ROI	1
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Rook	0
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signature.tools.lib.v2.1.2	0
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survey	5
taxize	2
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tm	5
tmvtnorm	1
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tuneR	0
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VIBER	0
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WikidataQueryServiceR	0
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BSgenome.Hsapiens.1000genomes.hs37d5	0
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org.At.tair.db	1
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assertr	1
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lle	0
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MsBackendMsp	331
Rbwa	89
cellxgenedp	110
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bandle	85
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epimutacions	84
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seriation	32
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haven	64
infer	14
parsnip	14
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rsample	18
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RcppArmadillo	201
lme4	104
survival	253
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stringr	122
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mgcv	213
colorspace	136
rstudioapi	135
parallelly	206
uuid	240
gtools	34
Hmisc	36
htmlTable	29
svglite	22
bslib	337
brio	165
rprojroot	92
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proxy	2
shinydashboard	3
av	1
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covr	5
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csv	0
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ggforce	36
yulab.utils	65
gnm	0
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JM	0
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gt	41
geometry	1
lobstr	2
mrgsolve	1
mlr3measures	2
modeldata	13
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RPostgreSQL	4
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FlowSorted.Blood.450k	0
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Rcapture	1
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RNetCDF	3
rlistings	2
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GeneNMF	1
ensurer	1
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Johnson	1
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probably	1
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msatR	0
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DiurnalMRI	0
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zli	1
iRanges	1
latentnet	1
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BSgenome.Dmelanogaster.UCSC.dm3	1
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NACHO	0
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tidySpatialExperiment	66
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dar	48
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DegCre	49
CaMutQC	56
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cols4all	1
UCSC.utils	27528
rbioinfcookbook	1
sleuth	1
zingeR	1
pwalign	4469
graphiQs	1
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smartid	66
scMultiSim	53
multistateQTL	48
SpotSweeper	50
fairhub.r.client	1
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epiregulon	55
HicAggR	50
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PRONE	21
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illuminaHumanv1.db	1
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ips	2
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argusDS.distributions	0
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pd.hta.2.0	1
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vitae	0
argusDS.gamlss.smoothers	0
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00TABLE	1
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org.Hs.eg.dB	1
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assertive.data.uk	1
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hdf5	1
teal.data	3
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IlluminaHumanMethylationEPICv2manifest	1
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primeviewcdf	2
hugene10sttranscriptcluster.db	2
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liger	2
broadSeq	35
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deEndometrial	1
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rCharts	1
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coRanking	1
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dominoSignal	30
widgetframe	1
leafsync	1
tidysbml	24
cdcfluview	1
dblypr	1
argusDS.signal.backtesting	1
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scrapper	27
EGSEAdata	1
BloodCancerMultiOmics2017	1
admiralroche	1
dunlin	1
scoup	18
MsBackendMetaboLights	19
massTRACE2Tools	1
cobasmsThemes	1
teal.builder	1
plyxp	18
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taylor	1
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coverageview	0
JBrowseR	0
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argusDS.gamboostLSS	0
Biostring	1
rayrender	1
ore	1
ProgMan	1
od	1
berryFunctions	1
iatlasGraphQLClient	1
utilsStuff	1
mycor	1
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unix	1
gGnome	1
tmcn	1
ROCit	1
ftExtra	1
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cvTools	1
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DDRTree	1
ICC	1
otargen	1
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rwdisplay	1
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tourr	1
rprotobuflib	1
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Rhdf5kib	1
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rusinglecell	0
refinr	0
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tidyHeatmap	0
mvpart	0
V.PhyloMaker2	0
regress	1
genomicRanges	1
schoolmath	1
Rlabkey	1
tiledb	1
powsimR	1
ComplexUpset	1
taskscheduleR	1
eq5d	1
excelR	1
deconfectHelpers	1
wallace	1
SSDM	1
rangeModelMetadata	1
rgnparser	1
bib2df	1
frictionless	1
merge	1
trendeval	1
teal.goshawk	1
WA43966.shareR.3043877	1
DARAtools	1
daapr	1
dpdeploy	1
treesitter.r	1
ctsem	1
dynamite	1
dplyr12	1
cnvrd2	1
derfinderData	1
autometric	1
shinylive	1
CIBERSORTx	1
MBESS	0
EMVS	0
mixture	0
ufs	0
parcats	0
rsatscan	0
XIFF	0
tidydr	0
svMisc	1
godmode	0
ptw	1
pbv	1
parquetize	1
envalysis	1
spdata	1
chAMP	1
ddpcr	1
hgu95av2cdf	1
pivotalPilars	1
CARTools	1
r-library-rags-stash	1
qualtRics	1
screpertoire	1
bgs.ggtheme	1
R	1
gp.version	1
rbacon	1
rintcal	1
oceanflow	1
BCS.RSB	1
BCS.OptimizedDesignsForPrism	1
conos	1
singler	1
Polytect	6
AlphaSimR	1
ReducedExperiment	5
geyser	5
dgof	1
h5mread	15
DoubletDecon	0
reactable.extras	0
standby	0
ympes	0
leafgl	0
DAISIEprep	1
bWGR	0
dandelionR	0
MATRIX	1
PCDSpline	1
qctools	1
conflrhlx	1
bonemarrowref.SeuratData	0
CePa	1
QGDA	1
dipsaus	0
scarHRD	0
blocksdesign	1
turner	1
paran	1
ProfilerAPI2	0
beachmat.tiledb	7
dropletutils	1
hypothesis	1
revealxpress	1
popEpi	0
iclusterplus	0
bonsai	0
cicerone	1
mmrbws	1
ggsurfvit	1
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hta.ard	1
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org.Ssalar.eg.db	0
colorSpec	0
tidygate	0
cclust	0
ELViS	0
stabilityTools	1
Runiversal	1
RTriangle	1
obliqueRF	1
BulkSignalR	2
s3	1
depmapSLr	1
cpp11bigwig	1
scQTLtools	1
MetaboDynamics	0
ChronosDSTools	0
DropletQC	0
chevreulProcess	0
HiCParser	0
bedbaser	0
XeniumIO	0
emoji	0
MATRIXS	1
TreeTools	1
pneumotypr	1
argusDS.studio.visualisations	1
vtable	1
koalaNetworkDriveData	0
seraut	0
bibliometrix	0
quanteda.textstats	0
fastmat	0
COCONUT	0
ccclust	0
DWSClient	1
rtfmt	1
minga	1
pRRophetic	1
Andromeda	1
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VISION	0
ParallelLogger	1
ondisc	0
eatRep	1
PopVar	1
statgenSTA	1
TrIdent	4
SpATS	1
mist	1
smoppix	3
maaslin3	3
SpatialPack	1
random.cdisc.data	1
xCell2	3
SpatialExperimentIO	1
biocmake	0
PICB	0
sdw	0
SurvMetrics	0
rempsyc	0
MSstatsBioNet	0
NNsig	1
openalexR	0
PSweight	0
RaMS	1
autoslideR	1
FCPS	1
protoclust	1
CETS	0
clixyzabc	1
desplot	1
nc	1
ctv	0
SRAdbV2	0