leeBamViews
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see leeBamViews.
leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009
Bioconductor version: 3.8
data from PMID 19096707; prototype for managing multiple NGS samples
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("leeBamViews")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("leeBamViews")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("leeBamViews")
managing multiple NGS samples with bamViews | R Script | |
Reference Manual |
Details
biocViews | ExperimentData, RNASeqData, SNPData, Saccharomyces_cerevisiae_Data, SequencingData |
Version | 1.18.0 |
License | Artistic 2.0 |
Depends | R (>= 2.15.0), Biobase, Rsamtools(>= 0.1.50), BSgenome |
Imports | GenomicRanges, GenomicAlignments, methods |
System Requirements | |
URL |
See More
Suggests | GenomeGraphs, biomaRt, org.Sc.sgd.db, edgeR |
Linking To | |
Enhances | multicore |
Depends On Me | |
Imports Me | |
Suggests Me | EDASeq |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | leeBamViews_1.18.0.tar.gz |
Windows Binary | |
Mac OS X 10.11 (El Capitan) | |
Source Repository | git clone https://git.bioconductor.org/packages/leeBamViews |
Source Repository (Developer Access) | git clone [email protected]:packages/leeBamViews |
Package Short Url | https://bioconductor.org/packages/leeBamViews/ |
Package Downloads Report | Download Stats |