CopyhelpeR

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see CopyhelpeR.

Helper files for CopywriteR


Bioconductor version: 3.8

This package contains the helper files that are required to run the Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content and mappability files for the reference genomes hg18, hg19, hg38, mm9 and mm10. In addition, it contains a blacklist filter to remove regions that display CNV. Files are stored as GRanges objects from the GenomicRanges Bioconductor package.

Author: Thomas Kuilman

Maintainer: Oscar Krijgsman <o.krijgsman at nki.nl>

Citation (from within R, enter citation("CopyhelpeR")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CopyhelpeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CopyhelpeR")
CopyhelpeR PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, GenomicSequence, Homo_sapiens
Version 1.14.0
License GPL-2
Depends R (>= 2.10)
Imports
System Requirements
URL
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Suggests BiocStyle
Linking To
Enhances
Depends On Me
Imports Me CopywriteR
Suggests Me
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CopyhelpeR_1.14.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/CopyhelpeR
Source Repository (Developer Access) git clone [email protected]:packages/CopyhelpeR
Package Short Url https://bioconductor.org/packages/CopyhelpeR/
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