CopyhelpeR
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see CopyhelpeR.
Helper files for CopywriteR
Bioconductor version: 3.8
This package contains the helper files that are required to run the Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content and mappability files for the reference genomes hg18, hg19, hg38, mm9 and mm10. In addition, it contains a blacklist filter to remove regions that display CNV. Files are stored as GRanges objects from the GenomicRanges Bioconductor package.
Author: Thomas Kuilman
Maintainer: Oscar Krijgsman <o.krijgsman at nki.nl>
citation("CopyhelpeR")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CopyhelpeR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CopyhelpeR")
CopyhelpeR | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ExperimentData, GenomicSequence, Homo_sapiens |
Version | 1.14.0 |
License | GPL-2 |
Depends | R (>= 2.10) |
Imports | |
System Requirements | |
URL |
See More
Suggests | BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | CopywriteR |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | CopyhelpeR_1.14.0.tar.gz |
Windows Binary | |
Mac OS X 10.11 (El Capitan) | |
Source Repository | git clone https://git.bioconductor.org/packages/CopyhelpeR |
Source Repository (Developer Access) | git clone [email protected]:packages/CopyhelpeR |
Package Short Url | https://bioconductor.org/packages/CopyhelpeR/ |
Package Downloads Report | Download Stats |