XtraSNPlocs.Hsapiens.dbSNP144.GRCh37
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see XtraSNPlocs.Hsapiens.dbSNP144.GRCh37.
Extra SNP locations for Homo sapiens (dbSNP Build 144)
Bioconductor version: 3.8
Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 29-30, 2015, and contain SNPs mapped to reference genome GRCh37.p13 (a patched version of GRCh37 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh37 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).
Author: Herve Pages
Maintainer: H. Pages <hpages at fhcrc.org>
citation("XtraSNPlocs.Hsapiens.dbSNP144.GRCh37")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("XtraSNPlocs.Hsapiens.dbSNP144.GRCh37")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, Genetics, Homo_sapiens, XtraSNPlocs |
| Version | 0.99.12 |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), BSgenome |
| Imports | methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome |
| System Requirements | |
| URL |
See More
| Suggests | Biostrings, BSgenome.Hsapiens.UCSC.hg19, SNPlocs.Hsapiens.dbSNP144.GRCh37 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | appreci8R |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | XtraSNPlocs.Hsapiens.dbSNP144.GRCh37_0.99.12.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Package Short Url | https://bioconductor.org/packages/XtraSNPlocs.Hsapiens.dbSNP144.GRCh37/ |
| Package Downloads Report | Download Stats |