SNPlocs.Hsapiens.dbSNP141.GRCh38
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see SNPlocs.Hsapiens.dbSNP141.GRCh38.
SNP locations for Homo sapiens (dbSNP Build 141)
Bioconductor version: 3.8
SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 141. The source data files used for this package were created by NCBI on May 1st, 2014, and contain SNPs mapped to reference genome GRCh38. Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38. IMPORTANT NOTE: This package is deprecated. Please use a SNPlocs data package based on a more recent dbSNP BUILD instead (e.g. BUILD 144 or BUILD 149). You can call BSgenome::available.SNPs() from R to get the list of available SNPlocs data packages.
Author: Herve Pages
Maintainer: H. Pages <hpages at fhcrc.org>
citation("SNPlocs.Hsapiens.dbSNP141.GRCh38")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SNPlocs.Hsapiens.dbSNP141.GRCh38")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, Genetics, Homo_sapiens, SNPlocs |
| Version | 0.99.11 |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome(>= 1.33.9) |
| Imports | methods, utils, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome |
| System Requirements | |
| URL |
See More
| Suggests | Biostrings, BSgenome.Hsapiens.NCBI.GRCh38(>= 1.3.19) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | genotypeeval, XtraSNPlocs.Hsapiens.dbSNP141.GRCh38 |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SNPlocs.Hsapiens.dbSNP141.GRCh38_0.99.11.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Package Short Url | https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP141.GRCh38/ |
| Package Downloads Report | Download Stats |