quantsmooth
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see quantsmooth.
Quantile smoothing and genomic visualization of array data
Bioconductor version: 3.8
Implements quantile smoothing as introduced in: Quantile smoothing of array CGH data; Eilers PH, de Menezes RX; Bioinformatics. 2005 Apr 1;21(7):1146-53.
Author: Jan Oosting, Paul Eilers, Renee Menezes
Maintainer: Jan Oosting <j.oosting at lumc.nl>
Citation (from within R, enter
citation("quantsmooth")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("quantsmooth")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("quantsmooth")
quantsmooth | R Script | |
Reference Manual |
Details
biocViews | CopyNumberVariation, Software, Visualization |
Version | 1.48.0 |
In Bioconductor since | BioC 1.9 (R-2.4) (17.5 years) |
License | GPL-2 |
Depends | R (>= 2.10.0), quantreg, grid |
Imports | |
System Requirements | |
URL |
See More
Suggests | |
Linking To | |
Enhances | |
Depends On Me | beadarraySNP |
Imports Me | GWASTools, SIM |
Suggests Me | PREDA |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | quantsmooth_1.48.0.tar.gz |
Windows Binary | quantsmooth_1.48.0.zip |
Mac OS X 10.11 (El Capitan) | quantsmooth_1.48.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/quantsmooth |
Source Repository (Developer Access) | git clone [email protected]:packages/quantsmooth |
Bioc Package Browser | https://code.bioconductor.org/browse/quantsmooth/ |
Package Short Url | https://bioconductor.org/packages/quantsmooth/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.8 | Source Archive |