pandaR

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see pandaR.

PANDA Algorithm

Bioconductor version: 3.8

Runs PANDA, an algorithm for discovering novel network structure by combining information from multiple complementary data sources.

Author: Dan Schlauch, Joseph N. Paulson, Albert Young, John Quackenbush, Kimberly Glass

Maintainer: Joseph N. Paulson <jpaulson at jimmy.harvard.edu>, Dan Schlauch <dschlauch at fas.harvard.edu>

Citation (from within R, enter citation("pandaR")):

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pandaR")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pandaR")

pandaR Package	HTML	R Script
Reference Manual	PDF

biocViews	GeneExpression, GeneRegulation, GraphAndNetwork, Microarray, Network, NetworkInference, Software, StatisticalMethod, Transcription
Version	1.14.0
In Bioconductor since	BioC 3.1 (R-3.2) (9 years)
License	GPL-2
Depends	R (>= 3.0.0), methods, Biobase, BiocGenerics
Imports	matrixStats, igraph, ggplot2, grid, reshape, plyr, RUnit, hexbin
System Requirements
URL

Follow Installation instructions to use this package in your R session.

Source Package	pandaR_1.14.0.tar.gz
Windows Binary	pandaR_1.14.0.zip
Mac OS X 10.11 (El Capitan)	pandaR_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/pandaR
Source Repository (Developer Access)	git clone [email protected]:packages/pandaR
Bioc Package Browser	https://code.bioconductor.org/browse/pandaR/
Package Short Url	https://bioconductor.org/packages/pandaR/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.8	Source Archive