cytofkit
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see cytofkit.
cytofkit: an integrated mass cytometry data analysis pipeline
Bioconductor version: 3.8
An integrated mass cytometry data analysis pipeline that enables simultaneous illustration of cellular diversity and progression.
Author: Jinmiao Chen, Hao Chen, Matthew Myint
Maintainer: Jinmiao Chen <Chen_Jinmiao at immunol.a-star.edu.sg>, Matthew Myint <a0124008 at u.nus.edu>
citation("cytofkit")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cytofkit")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Reference Manual |
Details
biocViews | BiomedicalInformatics, CellBiology, Clustering, DimensionReduction, FlowCytometry, GUI, Software |
Version | 1.14.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
License | Artistic-2.0 |
Depends | R (>= 3.4.0), ggplot2, plyr |
Imports | tcltk, grDevices, graphics, utils, stats, Rtsne, e1071, flowCore, gplots, colourpicker, VGAM, reshape2, ggrepel, shiny, shinyFiles, vegan, Biobase, doParallel, parallel, pdist, methods, destiny, FlowSOM(>= 1.4.0), igraph (>= 1.1.2), RANN (>= 2.5), Rcpp (>= 0.12.0) |
System Requirements | |
URL | https://github.com/JinmiaoChenLab/cytofkit |
Bug Reports | https://github.com/JinmiaoChenLab/cytofkit/issues |
See More
Suggests | knitr, RUnit, testthat, BiocGenerics |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
Mac OS X 10.11 (El Capitan) | |
Source Repository | git clone https://git.bioconductor.org/packages/cytofkit |
Source Repository (Developer Access) | git clone [email protected]:packages/cytofkit |
Package Short Url | https://bioconductor.org/packages/cytofkit/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.8 | Source Archive |