ampliQueso
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ampliQueso.
Analysis of amplicon enrichment panels
Bioconductor version: 3.8
The package provides tools and reports for the analysis of amplicon sequencing panels, such as AmpliSeq
Author: Alicja Szabelska <alicja.szabelska at up.poznan.pl>; Marek Wiewiorka <marek.wiewiorka at gmail.com>; Michal Okoniewski <michal at fgcz.ethz.ch>
Maintainer: Michal Okoniewski <michal at fgcz.ethz.ch>
citation("ampliQueso")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ampliQueso")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ampliQueso")| ampliQueso primer | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, RNASeq, ReportWriting, Sequencing, Software, Transcription, Visualization |
| Version | 1.20.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.15.0), rnaSeqMap(>= 2.17.1), knitr, rgl, ggplot2, gplots, parallel, doParallel, foreach, VariantAnnotation, genefilter, statmod, xtable |
| Imports | edgeR, DESeq, samr |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ampliQueso_1.20.0.tar.gz |
| Windows Binary | ampliQueso_1.20.0.zip |
| Mac OS X 10.11 (El Capitan) | ampliQueso_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ampliQueso |
| Source Repository (Developer Access) | git clone [email protected]:packages/ampliQueso |
| Package Short Url | https://bioconductor.org/packages/ampliQueso/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |