SPEM

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see SPEM.

S-system parameter estimation method


Bioconductor version: 3.8

This package can optimize the parameter in S-system models given time series data

Author: Xinyi YANG Developer, Jennifer E. DENT Developer and Christine NARDINI Supervisor

Maintainer: Xinyi YANG <yangxinyi at picb.ac.cn>

Citation (from within R, enter citation("SPEM")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SPEM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SPEM")
Vignette for SPEM PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Network, NetworkInference, Software
Version 1.22.0
In Bioconductor since BioC 2.12 (R-3.0) (11 years)
License GPL-2
Depends R (>= 2.15.1), Rsolnp, Biobase, methods
Imports
System Requirements
URL
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Suggests
Linking To
Enhances
Depends On Me
Imports Me TMixClust
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SPEM_1.22.0.tar.gz
Windows Binary SPEM_1.22.0.zip
Mac OS X 10.11 (El Capitan) SPEM_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SPEM
Source Repository (Developer Access) git clone [email protected]:packages/SPEM
Bioc Package Browser https://code.bioconductor.org/browse/SPEM/
Package Short Url https://bioconductor.org/packages/SPEM/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.8 Source Archive