IdeoViz
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see IdeoViz.
Plots data (continuous/discrete) along chromosomal ideogram
Bioconductor version: 3.8
Plots data associated with arbitrary genomic intervals along chromosomal ideogram.
Author: Shraddha Pai <shraddha.pai at utoronto.ca>, Jingliang Ren
Maintainer: Shraddha Pai <shraddha.pai at utoronto.ca>
Citation (from within R, enter
citation("IdeoViz")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("IdeoViz")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("IdeoViz")
IdeoViz: a package for plotting simple data along ideograms | R Script | |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | Microarray, Software, Visualization |
Version | 1.18.0 |
In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
License | GPL-2 |
Depends | Biobase, IRanges, GenomicRanges, RColorBrewer, rtracklayer, graphics, GenomeInfoDb |
Imports | |
System Requirements | |
URL |
See More
Suggests | |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | IdeoViz_1.18.0.tar.gz |
Windows Binary | IdeoViz_1.18.0.zip |
Mac OS X 10.11 (El Capitan) | IdeoViz_1.18.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/IdeoViz |
Source Repository (Developer Access) | git clone [email protected]:packages/IdeoViz |
Bioc Package Browser | https://code.bioconductor.org/browse/IdeoViz/ |
Package Short Url | https://bioconductor.org/packages/IdeoViz/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.8 | Source Archive |