ComplexHeatmap
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see ComplexHeatmap.
Making Complex Heatmaps
Bioconductor version: 3.8
Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential structures. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports self-defined annotation graphics.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu at dkfz.de>
citation("ComplexHeatmap")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ComplexHeatmap")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ComplexHeatmap")| 1. Introduction to ComplexHeatmap package | HTML | R Script |
| 2. Making a single heatmap | HTML | R Script |
| 3. Making a list of Heatmaps | HTML | R Script |
| 4. Heatmap Annotations | HTML | R Script |
| 5. Heatmap and Annotation Legends | HTML | R Script |
| 6. Heatmap Decoration | HTML | R Script |
| 7. Interactive with Heatmaps | HTML | R Script |
| 8. OncoPrint | HTML | R Script |
| 9. More Examples | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Sequencing, Software, Visualization |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.1.2), methods, grid, graphics, stats, grDevices |
| Imports | circlize (>= 0.4.1), GetoptLong, colorspace, RColorBrewer, GlobalOptions (>= 0.1.0) |
| System Requirements | |
| URL | https://github.com/jokergoo/ComplexHeatmap |
See More
| Suggests | testthat (>= 0.3), knitr, markdown, cluster, MASS, pvclust, dendsort, HilbertCurve, Cairo, png, jpeg, tiff, fastcluster, dendextend (>= 1.0.1) |
| Linking To | |
| Enhances | |
| Depends On Me | EnrichedHeatmap, recoup |
| Imports Me | artMS, BiocOncoTK, CATALYST, COCOA, cytofWorkflow, DEComplexDisease, DEGreport, DEP, diffcyt, ELMER, EnrichmentBrowser, fCCAC, ImpulseDE2, LineagePulse, maftools, MWASTools, PathoStat, singleCellTK, TCGAbiolinks, TCGAWorkflow, YAPSA |
| Suggests Me | gtrellis, HilbertCurve, TimeSeriesExperiment |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ComplexHeatmap_1.20.0.tar.gz |
| Windows Binary | ComplexHeatmap_1.20.0.zip |
| Mac OS X 10.11 (El Capitan) | ComplexHeatmap_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ComplexHeatmap |
| Source Repository (Developer Access) | git clone [email protected]:packages/ComplexHeatmap |
| Bioc Package Browser | https://code.bioconductor.org/browse/ComplexHeatmap/ |
| Package Short Url | https://bioconductor.org/packages/ComplexHeatmap/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |