ChromHeatMap
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see ChromHeatMap.
Heat map plotting by genome coordinate
Bioconductor version: 3.8
The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.
Author: Tim F. Rayner
Maintainer: Tim F. Rayner <tfrayner at gmail.com>
citation("ChromHeatMap")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ChromHeatMap")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChromHeatMap")
Plotting expression data with ChromHeatMap | R Script | |
Reference Manual |
Details
biocViews | Software, Visualization |
Version | 1.36.0 |
In Bioconductor since | BioC 2.5 (R-2.10) (14.5 years) |
License | Artistic-2.0 |
Depends | R (>= 2.9.0), BiocGenerics(>= 0.3.2), annotate(>= 1.20.0), AnnotationDbi(>= 1.4.0) |
Imports | Biobase(>= 2.17.8), graphics, grDevices, methods, stats, IRanges, rtracklayer, GenomicRanges |
System Requirements | |
URL |
See More
Suggests | ALL, hgu95av2.db |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | ChromHeatMap_1.36.0.tar.gz |
Windows Binary | ChromHeatMap_1.36.0.zip |
Mac OS X 10.11 (El Capitan) | ChromHeatMap_1.36.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ChromHeatMap |
Source Repository (Developer Access) | git clone [email protected]:packages/ChromHeatMap |
Bioc Package Browser | https://code.bioconductor.org/browse/ChromHeatMap/ |
Package Short Url | https://bioconductor.org/packages/ChromHeatMap/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.8 | Source Archive |