highthroughputassays
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see highthroughputassays.
Using Bioconductor with High Throughput Assays
Bioconductor version: 3.19
The workflow illustrates use of the flow cytometry packages to load, transform and visualize the flow data and gate certain populations in the dataset. The workflow loads the `flowCore`, `flowStats` and `flowWorkspace` packages and its dependencies. It loads the ITN data with 15 samples, each of which includes, in addition to FSC and SSC, 5 fluorescence channels: CD3, CD4, CD8, CD69 and HLADR.
Author: Bioconductor Package Maintainer [aut, cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("highthroughputassays")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("highthroughputassays")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("highthroughputassays")
Using Bioconductor with High Throughput Assays | HTML | R Script |
Details
biocViews | ImmunoOncologyWorkflow, ProteomicsWorkflow, Workflow |
Version | 1.28.0 |
License | Artistic-2.0 |
Depends | R (>= 3.3.0), flowCore, flowStats, flowWorkspace |
Imports | |
System Requirements | |
URL | https://www.bioconductor.org/help/workflows/highthroughputassays/ |
See More
Suggests | knitr, rmarkdown, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | highthroughputassays_1.28.0.tar.gz |
Windows Binary (x86_64) | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/highthroughputassays |
Source Repository (Developer Access) | git clone [email protected]:packages/highthroughputassays |
Package Short Url | https://bioconductor.org/packages/highthroughputassays/ |
Package Downloads Report | Download Stats |