microbiomeDataSets
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see microbiomeDataSets.
Experiment Hub based microbiome datasets
Bioconductor version: 3.19
microbiomeDataSets is a collection of microbiome datasets loaded from Bioconductor'S ExperimentHub infrastructure. The datasets serve as reference for workflows and vignettes published adjacent to the microbiome analysis tools on Bioconductor. Additional datasets can be added overtime and additions from authors are welcome.
Author: Leo Lahti [cre, aut] 
, Felix G.M. Ernst [aut] , Sudarshan Shetty [aut] , Chouaib Benchraka [ctb] , Yagmur Simsek [ctb]
Maintainer: Leo Lahti <leo.lahti at iki.fi>
citation("microbiomeDataSets")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("microbiomeDataSets")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("microbiomeDataSets")| microbiomeDataSets | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExperimentHub, MicrobiomeData, SequencingData |
| Version | 1.12.1 |
| License | CC0 |
| Depends | R (>= 4.1), SummarizedExperiment, TreeSummarizedExperiment, MultiAssayExperiment |
| Imports | methods, utils, BiocGenerics, ExperimentHub, Biostrings, ape |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, BiocStyle, SingleCellExperiment, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | miaViz, mia |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | microbiomeDataSets_1.12.1.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/microbiomeDataSets |
| Source Repository (Developer Access) | git clone [email protected]:packages/microbiomeDataSets |
| Package Short Url | https://bioconductor.org/packages/microbiomeDataSets/ |
| Package Downloads Report | Download Stats |