curatedAdipoChIP
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see curatedAdipoChIP.
A Curated ChIP-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)
Bioconductor version: 3.19
A curated dataset of publicly available ChIP-sequencing of transcription factors, chromatin remodelers and histone modifications in the 3T3-L1 pre-adipocyte cell line. The package document the data collection, pre-processing and processing of the data. In addition to the documentation, the package contains the scripts that was used to generated the data.
Author: Mahmoud Ahmed [aut, cre]
Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy at students.kasralainy.edu.eg>
citation("curatedAdipoChIP")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("curatedAdipoChIP")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("curatedAdipoChIP")
Using curatedAdipoChIP | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ChIPSeqData, ExperimentData, ExperimentHub, GEO, SequencingData |
Version | 1.20.0 |
License | GPL-3 |
Depends | R (>= 3.6), SummarizedExperiment, ExperimentHub |
Imports | |
System Requirements | |
URL | https://github.com/MahShaaban/curatedAdipoChIP |
Bug Reports | https://github.com/MahShaaban/curatedAdipoChIP/issues |
See More
Suggests | knitr, rmarkdown, GenomicFeatures, ChIPseeker, AnnotationDbi, S4Vectors, DESeq2, fastqcr, devtools, testthat, readr, dplyr, tidyr, ggplot2 |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | curatedAdipoChIP_1.20.0.tar.gz |
Windows Binary (x86_64) | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/curatedAdipoChIP |
Source Repository (Developer Access) | git clone [email protected]:packages/curatedAdipoChIP |
Package Short Url | https://bioconductor.org/packages/curatedAdipoChIP/ |
Package Downloads Report | Download Stats |