HighlyReplicatedRNASeq
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see HighlyReplicatedRNASeq.
Collection of Bulk RNA-Seq Experiments With Many Replicates
Bioconductor version: 3.19
Gene-level count matrix data for bulk RNA-seq dataset with many replicates. The data are provided as easy to use SummarizedExperiment objects. The source data that is made accessible through this package comes from https://github.com/bartongroup/profDGE48.
Author: Constantin Ahlmann-Eltze [aut, cre]
Maintainer: Constantin Ahlmann-Eltze <artjom31415 at googlemail.com>
citation("HighlyReplicatedRNASeq")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HighlyReplicatedRNASeq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HighlyReplicatedRNASeq")
Exploring the 86 bulk RNA-seq samples from the Schurch et al. (2016) study | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData |
Version | 1.16.0 |
License | MIT + file LICENSE |
Depends | SummarizedExperiment, ExperimentHub |
Imports | S4Vectors |
System Requirements | |
URL | https://github.com/const-ae/HighlyReplicatedRNASeq |
Bug Reports | https://github.com/const-ae/HighlyReplicatedRNASeq/issues |
See More
Suggests | BiocStyle, BiocFileCache, knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | HighlyReplicatedRNASeq_1.16.0.tar.gz |
Windows Binary (x86_64) | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/HighlyReplicatedRNASeq |
Source Repository (Developer Access) | git clone [email protected]:packages/HighlyReplicatedRNASeq |
Package Short Url | https://bioconductor.org/packages/HighlyReplicatedRNASeq/ |
Package Downloads Report | Download Stats |