JASPAR2020
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see JASPAR2020.
Data package for JASPAR database (version 2020)
Bioconductor version: 3.19
Data package for JASPAR2020. To search this databases, please use the package TFBSTools (>= 1.23.1).
Author: Damir Baranasic <damir.baranasic at lms.mrc.ac.uk>
Maintainer: Damir Baranasic <damir.baranasic at lms.mrc.ac.uk>
Citation (from within R, enter
citation("JASPAR2020")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("JASPAR2020")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("JASPAR2020")| JASPAR2020 | HTML | R Script |
| Reference Manual |
Details
| biocViews | AnnotationData, FunctionalAnnotation |
| Version | 0.99.10 |
| License | GPL-2 |
| Depends | R (>= 3.6.0), methods |
| Imports | |
| System Requirements | |
| URL | http://jaspar.genereg.net/ |
See More
| Suggests | knitr, rmarkdown, TFBSTools(>= 1.23.1) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | monaLisa, motifStack |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | JASPAR2020_0.99.10.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Package Short Url | https://bioconductor.org/packages/JASPAR2020/ |
| Package Downloads Report | Download Stats |