pathRender
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see pathRender.
Render molecular pathways
Bioconductor version: 3.19
build graphs from pathway databases, render them by Rgraphviz.
Author: Li Long <lilong at isb-sib.ch>
Maintainer: Vince Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("pathRender")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pathRender")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pathRender")
pathRender overview | R Script | |
pathway graphs colored by expression map | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | GraphAndNetwork, Pathways, Software, Visualization |
Version | 1.72.0 |
In Bioconductor since | BioC 1.8 (R-2.3) (18.5 years) |
License | LGPL |
Depends | graph, Rgraphviz, RColorBrewer, cMAP, AnnotationDbi, methods, stats4 |
Imports | |
System Requirements | |
URL | http://www.bioconductor.org |
See More
Suggests | ALL, hgu95av2.db |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | pathRender_1.72.0.tar.gz |
Windows Binary (x86_64) | pathRender_1.72.0.zip (64-bit only) |
macOS Binary (x86_64) | pathRender_1.72.0.tgz |
macOS Binary (arm64) | pathRender_1.72.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/pathRender |
Source Repository (Developer Access) | git clone [email protected]:packages/pathRender |
Bioc Package Browser | https://code.bioconductor.org/browse/pathRender/ |
Package Short Url | https://bioconductor.org/packages/pathRender/ |
Package Downloads Report | Download Stats |