ggtreeDendro
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see ggtreeDendro.
Drawing 'dendrogram' using 'ggtree'
Bioconductor version: 3.19
Offers a set of 'autoplot' methods to visualize tree-like structures (e.g., hierarchical clustering and classification/regression trees) using 'ggtree'. You can adjust graphical parameters using grammar of graphic syntax and integrate external data to the tree.
Author: Guangchuang Yu [aut, cre, cph] , Shuangbin Xu [ctb] , Chuanjie Zhang [ctb]
Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>
citation("ggtreeDendro")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ggtreeDendro")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ggtreeDendro")
Visualizing Dendrogram using ggtree | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Classification, Clustering, DecisionTree, Phylogenetics, Software, Visualization |
Version | 1.6.0 |
In Bioconductor since | BioC 3.16 (R-4.2) (2 years) |
License | Artistic-2.0 |
Depends | ggtree(>= 3.5.3) |
Imports | ggplot2, stats, tidytree, utils |
System Requirements | |
URL |
See More
Suggests | aplot, cluster, knitr, MASS, mdendro, prettydoc, pvclust, rmarkdown, testthat (>= 3.0.0), treeio, yulab.utils |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | ggtreeDendro_1.6.0.tar.gz |
Windows Binary (x86_64) | ggtreeDendro_1.6.0.zip |
macOS Binary (x86_64) | ggtreeDendro_1.6.0.tgz |
macOS Binary (arm64) | ggtreeDendro_1.6.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ggtreeDendro |
Source Repository (Developer Access) | git clone [email protected]:packages/ggtreeDendro |
Bioc Package Browser | https://code.bioconductor.org/browse/ggtreeDendro/ |
Package Short Url | https://bioconductor.org/packages/ggtreeDendro/ |
Package Downloads Report | Download Stats |