customCMPdb
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see customCMPdb.
Customize and Query Compound Annotation Database
Bioconductor version: 3.19
This package serves as a query interface for important community collections of small molecules, while also allowing users to include custom compound collections.
Author: Yuzhu Duan [aut, cre], Thomas Girke [aut]
Maintainer: Yuzhu Duan <yduan004 at ucr.edu>
citation("customCMPdb")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("customCMPdb")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("customCMPdb")
customCMPdb | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | AnnotationHubSoftware, Cheminformatics, Software |
Version | 1.14.0 |
In Bioconductor since | BioC 3.12 (R-4.0) (4 years) |
License | Artistic-2.0 |
Depends | R (>= 4.0) |
Imports | AnnotationHub, RSQLite, XML, utils, ChemmineR, methods, stats, rappdirs, BiocFileCache |
System Requirements | |
URL | https://github.com/yduan004/customCMPdb/ |
Bug Reports | https://github.com/yduan004/customCMPdb/issues |
See More
Suggests | knitr, rmarkdown, testthat, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | customCMPdb_1.14.0.tar.gz |
Windows Binary (x86_64) | customCMPdb_1.14.0.zip |
macOS Binary (x86_64) | customCMPdb_1.14.0.tgz |
macOS Binary (arm64) | customCMPdb_1.14.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/customCMPdb |
Source Repository (Developer Access) | git clone [email protected]:packages/customCMPdb |
Bioc Package Browser | https://code.bioconductor.org/browse/customCMPdb/ |
Package Short Url | https://bioconductor.org/packages/customCMPdb/ |
Package Downloads Report | Download Stats |