RNAinteract
This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RNAinteractMAPK.
Estimate Pairwise Interactions from multidimensional features
Bioconductor version: 3.19
RNAinteract estimates genetic interactions from multi-dimensional read-outs like features extracted from images. The screen is assumed to be performed in multi-well plates or similar designs. Starting from a list of features (e.g. cell number, area, fluorescence intensity) per well, genetic interactions are estimated. The packages provides functions for reporting interacting gene pairs, plotting heatmaps and double RNAi plots. An HTML report can be written for quality control and analysis.
Author: Bernd Fischer [aut], Wolfgang Huber [ctb], Mike Smith [cre]
Maintainer: Mike Smith <mike.smith at embl.de>
citation("RNAinteract")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RNAinteract")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RNAinteract")| RNAinteract | R Script | |
| Reference Manual |
Details
| biocViews | CellBasedAssays, ImmunoOncology, Preprocessing, QualityControl, Software, Visualization |
| Version | 1.52.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (13.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.12.0) |
| Imports | RColorBrewer, ICS, ICSNP, cellHTS2, geneplotter, gplots, grid, hwriter, lattice, latticeExtra, limma, methods, splots(>= 1.13.12), abind, locfit, Biobase |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | RNAinteractMAPK |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RNAinteract_1.52.0.tar.gz |
| Windows Binary (x86_64) | RNAinteract_1.52.0.zip (64-bit only) |
| macOS Binary (x86_64) | RNAinteract_1.52.0.tgz |
| macOS Binary (arm64) | RNAinteract_1.52.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RNAinteract |
| Source Repository (Developer Access) | git clone [email protected]:packages/RNAinteract |
| Bioc Package Browser | https://code.bioconductor.org/browse/RNAinteract/ |
| Package Short Url | https://bioconductor.org/packages/RNAinteract/ |
| Package Downloads Report | Download Stats |