MSstatsConvert
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see MSstatsConvert.
Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format
Bioconductor version: 3.19
MSstatsConvert provides tools for importing reports of Mass Spectrometry data processing tools into R format suitable for statistical analysis using the MSstats and MSstatsTMT packages.
Author: Mateusz Staniak [aut, cre], Meena Choi [aut], Ting Huang [aut], Olga Vitek [aut]
Maintainer: Mateusz Staniak <mtst at mstaniak.pl>
citation("MSstatsConvert")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MSstatsConvert")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MSstatsConvert")
Working with MSstatsConvert | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataImport, MassSpectrometry, Proteomics, QualityControl, Software |
Version | 1.14.0 |
In Bioconductor since | BioC 3.12 (R-4.0) (4 years) |
License | Artistic-2.0 |
Depends | R (>= 4.0) |
Imports | data.table, log4r, methods, checkmate, utils, stringi |
System Requirements | |
URL |
See More
Suggests | tinytest, covr, knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | MSstatsBig, MSstatsLiP, MSstatsPTM, MSstatsShiny, MSstatsTMT, MSstats |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | MSstatsConvert_1.14.0.tar.gz |
Windows Binary (x86_64) | MSstatsConvert_1.14.0.zip (64-bit only) |
macOS Binary (x86_64) | MSstatsConvert_1.14.0.tgz |
macOS Binary (arm64) | MSstatsConvert_1.14.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MSstatsConvert |
Source Repository (Developer Access) | git clone [email protected]:packages/MSstatsConvert |
Bioc Package Browser | https://code.bioconductor.org/browse/MSstatsConvert/ |
Package Short Url | https://bioconductor.org/packages/MSstatsConvert/ |
Package Downloads Report | Download Stats |