CNORfeeder
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see CNORfeeder.
Integration of CellNOptR to add missing links
Bioconductor version: 3.19
This package integrates literature-constrained and data-driven methods to infer signalling networks from perturbation experiments. It permits to extends a given network with links derived from the data via various inference methods and uses information on physical interactions of proteins to guide and validate the integration of links.
Author: Federica Eduati [aut], Enio Gjerga [ctb], Attila Gabor [cre]
Maintainer: Attila Gabor <attila.gabor at uni-heidelberg.de>
citation("CNORfeeder")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CNORfeeder")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CNORfeeder")
Main vignette:Playing with networks using CNORfeeder | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | CellBasedAssays, CellBiology, NetworkInference, Proteomics, Software |
Version | 1.44.0 |
In Bioconductor since | BioC 2.12 (R-3.0) (11.5 years) |
License | GPL-3 |
Depends | R (>= 3.6.0), CellNOptR(>= 1.4.0), graph |
Imports | |
System Requirements | |
URL |
See More
Suggests | minet, Rgraphviz, RUnit, BiocGenerics, igraph |
Linking To | |
Enhances | MEIGOR |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | CNORfeeder_1.44.0.tar.gz |
Windows Binary (x86_64) | CNORfeeder_1.44.0.zip (64-bit only) |
macOS Binary (x86_64) | CNORfeeder_1.44.0.tgz |
macOS Binary (arm64) | CNORfeeder_1.44.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/CNORfeeder |
Source Repository (Developer Access) | git clone [email protected]:packages/CNORfeeder |
Bioc Package Browser | https://code.bioconductor.org/browse/CNORfeeder/ |
Package Short Url | https://bioconductor.org/packages/CNORfeeder/ |
Package Downloads Report | Download Stats |