AffiXcan
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see AffiXcan.
A Functional Approach To Impute Genetically Regulated Expression
Bioconductor version: 3.19
Impute a GReX (Genetically Regulated Expression) for a set of genes in a sample of individuals, using a method based on the Total Binding Affinity (TBA). Statistical models to impute GReX can be trained with a training dataset where the real total expression values are known.
Author: Alessandro Lussana [aut, cre]
Maintainer: Alessandro Lussana <alessandro.lussana at protonmail.com>
citation("AffiXcan")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AffiXcan")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AffiXcan")
AffiXcan | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DimensionReduction, GeneExpression, GeneRegulation, PrincipalComponent, Regression, Software, Transcription |
Version | 1.22.0 |
In Bioconductor since | BioC 3.8 (R-3.5) (6 years) |
License | GPL-3 |
Depends | R (>= 3.6), SummarizedExperiment |
Imports | MultiAssayExperiment, BiocParallel, crayon |
System Requirements | |
URL |
See More
Suggests | BiocStyle, knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | AffiXcan_1.22.0.tar.gz |
Windows Binary (x86_64) | AffiXcan_1.22.0.zip |
macOS Binary (x86_64) | AffiXcan_1.22.0.tgz |
macOS Binary (arm64) | AffiXcan_1.22.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/AffiXcan |
Source Repository (Developer Access) | git clone [email protected]:packages/AffiXcan |
Bioc Package Browser | https://code.bioconductor.org/browse/AffiXcan/ |
Package Short Url | https://bioconductor.org/packages/AffiXcan/ |
Package Downloads Report | Download Stats |