ACME
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see ACME.
Algorithms for Calculating Microarray Enrichment (ACME)
Bioconductor version: 3.19
ACME (Algorithms for Calculating Microarray Enrichment) is a set of tools for analysing tiling array ChIP/chip, DNAse hypersensitivity, or other experiments that result in regions of the genome showing "enrichment". It does not rely on a specific array technology (although the array should be a "tiling" array), is very general (can be applied in experiments resulting in regions of enrichment), and is very insensitive to array noise or normalization methods. It is also very fast and can be applied on whole-genome tiling array experiments quite easily with enough memory.
Author: Sean Davis <sdavis2 at mail.nih.gov>
Maintainer: Sean Davis <sdavis2 at mail.nih.gov>
citation("ACME")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ACME")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ACME")| ACME | R Script | |
| Reference Manual |
Details
| biocViews | Microarray, Normalization, Software, Technology |
| Version | 2.60.0 |
| In Bioconductor since | BioC 2.0 (R-2.5) (17.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.10), Biobase(>= 2.5.5), methods, BiocGenerics |
| Imports | graphics, stats |
| System Requirements | |
| URL | http://watson.nci.nih.gov/~sdavis |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | oligo |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ACME_2.60.0.tar.gz |
| Windows Binary (x86_64) | ACME_2.60.0.zip (64-bit only) |
| macOS Binary (x86_64) | ACME_2.60.0.tgz |
| macOS Binary (arm64) | ACME_2.60.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ACME |
| Source Repository (Developer Access) | git clone [email protected]:packages/ACME |
| Bioc Package Browser | https://code.bioconductor.org/browse/ACME/ |
| Package Short Url | https://bioconductor.org/packages/ACME/ |
| Package Downloads Report | Download Stats |